Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05508 ATGGGTGAGGTCGCAGTATTGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATGAAGTTTATGACGGAGAAAGACGTGTATAATTTACCATCGAATGAGCACGTGCATGAAGAAAAATCCAGCCAATCATCAGACCACAAAAAGATCGATGACTTGCGAGAGAGAGGATATATGGAATATGGATGTCAACATTATCGGAGAAGGTGTCGTATTAGGGCCCCCTGTTGCAATGAGATATTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAGCATCAACGTTGATCAGAAGCACAGACACGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTGAAACTGAACAAGAGGTTCAGCAGAATTGTGTCAATTGTGGTGTGTGCATGGGAAAGTACTTCTGCGAGACGTGTAAGCTCTTCGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACCGGAGGATGTGAGAATTTCTTCCACTGCTACAAATGTGGTTGTTGCTTCTCAACTCTGTTGAAAAACGGTCACCCTTGCGTGGAAGGAGCAATGCATCACGATTGTCCTATTTGCTTTGAGTATTTGTTTGATTCTGTTAACGATGTCAGCGTGTTGCATTGCGGACATACAATCCATAAGAGCTGTTTGAATGAAATGAGGGAACATTTTCAGTATGCATGCCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCGAAGGTTTGGGAAAAAATTGACTTGGAAATTGCTGCTACACCAATGCCTGAACCATATCTTAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTGAAAATTCTCACACCCAATTCCATCTTGTTGCACAGAAGTGTTTGAATTGCAAATCTTACAACACAAGACAAACAAGAGGCTGCTGA 930 0.4215 MGEVAVLHSEPLQFECNDMKFMTEKDVYNLPSNEHVHEEKSSQSSDHKKIDDLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSINVDQKHRHDIPRHQVKQVICSLCETEQEVQQNCVNCGVCMGKYFCETCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCFSTLLKNGHPCVEGAMHHDCPICFEYLFDSVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLEIAATPMPEPYLNKMVWILCNDCGENSHTQFHLVAQKCLNCKSYNTRQTRGC 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05508 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 261 IPR013083 -
Trre6g05508 309 Gene3D - 270 309 - -
Trre6g05508 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 33 307 - -
Trre6g05508 309 SUPERFAMILY Zinc hairpin stack 135 192 IPR037275 -
Trre6g05508 309 ProSiteProfiles Zinc finger CTCHY-type profile. 134 198 IPR017921 -
Trre6g05508 309 ProSiteProfiles Zinc finger CHY-type profile. 56 132 IPR008913 GO:0008270
Trre6g05508 309 SMART ring_2 199 241 IPR001841 -
Trre6g05508 309 ProSiteProfiles Zinc finger RING-type profile. 199 242 IPR001841 -
Trre6g05508 309 Pfam CHY zinc finger 63 144 IPR008913 GO:0008270
Trre6g05508 309 SUPERFAMILY RING/U-box 198 246 - -
Trre6g05508 309 SUPERFAMILY CHY zinc finger-like 60 134 IPR037274 GO:0008270
Trre6g05508 309 Pfam Zinc-ribbon 246 304 IPR039512 -
Trre6g05508 309 Pfam Ring finger domain 198 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05508 Trre-Chr6 56444431 56447219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05508 61 308 C2H2 Transcription Factor Family AT3G18290 39.764 9.09e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05508 K10144 - gmx:100812023 621.698