Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre6g05503 | ATGCAGTTCAAATCAACACAATCCTCATTTCGAGATCGTACACATGAATTCCACACCGTTGCAGAGAGATTGAAGAAATCACTATCATCAGGATCAGGTTCAAATGGACCAAGCAGTAGTTCTTCTCCTTATCCTTCTTCCTCTGCCCCTTCTTCATCTTCTAGATCGGAGGATCCCCGATCTGCCGTTGCAATTCAATCGGAATTTAATCGAAGAGCTTCCAAGATTGGCTTTGGAATTCATCAAACCTCTCAGAAACTTTCCAAGCTCGCCAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACCATGGAAATTCAAGAATTAACAAGTGTTATTAAGCAAGATATTACTGCACTTAACTCTGCGGTTGTGGATCTTCAATTAATTAGCAATTCTAGAAATGAGAGTGGAAATGTTTCTACCGACACAACTAGCCATTCAACTACAGTTGTCGATGATCTAAAGACTCGATTGATGAGCACTACCAAAGAGTTTAAAGATGTTCTCACAATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAATTGTTTTCGGCAAATGCTTCTAAGGATAATGCAAATCCTTTCATCCGTCAACGTCCATTAGCTACAAAATCGGCTGCTAGTGCTTCTAATGCGCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGAAGGAGAGAGTCAACCGTTGCTGCAACAACAACAACAACAGGAGCAGCAGATGGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTCAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTCTGTTAAAGTATTTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTACTGATGTTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG | 1032 | 0.4176 | MQFKSTQSSFRDRTHEFHTVAERLKKSLSSGSGSNGPSSSSSPYPSSSAPSSSSRSEDPRSAVAIQSEFNRRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLISNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANASKDNANPFIRQRPLATKSAASASNAPAPPWASGKQVEGESQPLLQQQQQQEQQMVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre6g05503 | 343 | SMART | tSNARE_6 | 246 | 313 | IPR000727 | - | |
| Trre6g05503 | 343 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 8 | 26 | IPR021538 | - | |
| Trre6g05503 | 343 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Trre6g05503 | 343 | MobiDBLite | consensus disorder prediction | 25 | 61 | - | - | |
| Trre6g05503 | 343 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Trre6g05503 | 343 | Gene3D | - | 64 | 306 | - | - | |
| Trre6g05503 | 343 | MobiDBLite | consensus disorder prediction | 230 | 247 | - | - | |
| Trre6g05503 | 343 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 251 | 313 | IPR000727 | - | |
| Trre6g05503 | 343 | MobiDBLite | consensus disorder prediction | 207 | 247 | - | - | |
| Trre6g05503 | 343 | FunFam | Syntaxin-32 like | 63 | 306 | - | - | |
| Trre6g05503 | 343 | Pfam | SNARE domain | 288 | 339 | IPR000727 | - | |
| Trre6g05503 | 343 | CDD | SNARE_syntaxin5 | 254 | 327 | - | - | |
| Trre6g05503 | 343 | ProSitePatterns | Syntaxin / epimorphin family signature. | 257 | 296 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Trre6g05503 | 343 | SUPERFAMILY | t-snare proteins | 67 | 306 | IPR010989 | GO:0016020|GO:0016192 | |
| Trre6g05503 | 343 | PANTHER | SYNTAXIN | 66 | 331 | IPR045242 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre6g05503 | Trre-Chr6 | 56413211 | 56416454 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre6g05503 | 1 | 343 | SNARE and Associated Proteins | AT3G24350 | 62.032 | 1.69e-145 | 413 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre6g05503 | K08490 | - | gmx:100777961 | 475.707 |