Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05495 ATGGCTAAGGTTTGTAAGAAGTTTGATGATGTTGCTGATATCCTTCCTAACCAAGGTTCTACTCGAATCAAGGTTCGTGTTCTTAGGCTCTGGAAGATCCCCTCATTCTTAAATCCATCTGAAATCAGTTCAATTGAGATGGTCTTAATTGATGAAAAGGGTGCCAAGATACATGCTTCTATTAGGAAGCAGTTGCTGTATTTGTTTGAGTCTAAGATTGAAGAAGGTGAGGTGTATCAAATGTCCTGCTTTGCTGTTGCTCCTGAGGTGGGTTACTATAGAGCTACTCTTCATCCGTACAAGCTTCTGTTTCAGATCAAGACTCGTCTGCAACCCGTGAAGAACTCTCCTATATCTAAATTTGGTTTGAGTCTCACAAAGTTGGCTGAAGTTTGTAGTCATATTCATGATTACGAATTTTTGGTTGATGTCATTGGTTTGATGACTGGAATTTCTGCCGAAAGGGAGTATATAAGGGATGGGAAGATAACCAAGATGGTTATCGTTGAGTTAACTGATGCTAGTGGTAAATGTGAGTGTGCTATGTTTGGAGACTATGTTGATCAGTTAAACAAGAAAATGGGCAAGTCTGGTGAAGGTCTTCCAGTCATTGTTGTGCAGTTTGCAAAAATCAAGATTTTCAGGGATCAAGCATCTCTTCAAAATGTAATCAACACTACTAGGATTTTCATAAATCCTGACATCCCTGAAGTGGTTGAATTTAAGAATAGTATTGCTTTGCATGGGATTGATGTGGATTCATTTGTCCCTGTTATTGGTGGAAGAGCCAAACCTGCTATGGATGAAGAGTTTCTTCGTATGCATCCTAAAAAGAAAATTTCTGATCTTAGTGATATGGAGGAGGTTGGTGTATTCTCTGTTTATGGGGTTTTGACTGGGATAGTGCAAGGCGAGGATTGGTGGTACCCAGCCTGCAGGTGCCATAAGGCTGTCCTTCCTGATTCTGGAGCTTACTACTGCAATGGATGCTCCAAGCATGTGTTTCAATGTATCCCTAGGTTTAGGGTTAAGGTTGAGGTATCTGATGGTGATTCTACATGTGTGTTCGTGCTATTTGACTCTGACATGAGTTATATCATGGAGAAATCATGTGCTCATTTTGTGGGGAAAGCAAAGGTGCCCAATGAAGGTTCAGTTCCTGCTGAGTTTAATGCTTTGGTTGGTTCTAAGATGTTATTTATCATTGATAATGGCGTGAACCAATCAAAAATTATTGATGGAACTTTTAGGGTCAAACGTGTCTGCAGTGATTCTCAGATAATTAAAAAATTTCTACTTGAGGGACCTTTCATCACTCCTGTTAAGCCTATGTCTCAGGCAATTGAGATAGAATCAGACAGTGACCTTGCTGATGTCGATGTTGTCGAAGATTCGCAGCCGATGTCCTTCTTGAAGAACATTATTGTTACACCTCCTCTTGATGCCAAGAGCCCAGCTAAAGAAGACCCCATACTGGCTTCTGTTAAGAGGAACTTGGTTGAGCAGTTTGATGGTGCATCGAAGGTTGCAGAAAAGAAACCAATTAGGCGTGTTAGGGTTAAACTTGAGAAGGAATAG 1578 0.4062 MAKVCKKFDDVADILPNQGSTRIKVRVLRLWKIPSFLNPSEISSIEMVLIDEKGAKIHASIRKQLLYLFESKIEEGEVYQMSCFAVAPEVGYYRATLHPYKLLFQIKTRLQPVKNSPISKFGLSLTKLAEVCSHIHDYEFLVDVIGLMTGISAEREYIRDGKITKMVIVELTDASGKCECAMFGDYVDQLNKKMGKSGEGLPVIVVQFAKIKIFRDQASLQNVINTTRIFINPDIPEVVEFKNSIALHGIDVDSFVPVIGGRAKPAMDEEFLRMHPKKKISDLSDMEEVGVFSVYGVLTGIVQGEDWWYPACRCHKAVLPDSGAYYCNGCSKHVFQCIPRFRVKVEVSDGDSTCVFVLFDSDMSYIMEKSCAHFVGKAKVPNEGSVPAEFNALVGSKMLFIIDNGVNQSKIIDGTFRVKRVCSDSQIIKKFLLEGPFITPVKPMSQAIEIESDSDLADVDVVEDSQPMSFLKNIIVTPPLDAKSPAKEDPILASVKRNLVEQFDGASKVAEKKPIRRVRVKLEKE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05495 525 Gene3D - 9 115 IPR012340 -
Trre6g05495 525 CDD RPA1_DBD_A_like 22 109 - -
Trre6g05495 525 PANTHER OS03G0429900 PROTEIN 14 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g05495 525 Pfam Replication factor-A C terminal domain 292 384 IPR013955 -
Trre6g05495 525 SUPERFAMILY Nucleic acid-binding proteins 277 402 IPR012340 -
Trre6g05495 525 CDD RPA1_DBD_B_like 143 242 - -
Trre6g05495 525 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Trre6g05495 525 SUPERFAMILY Nucleic acid-binding proteins 124 253 IPR012340 -
Trre6g05495 525 Pfam Domain of unknown function DUF223 46 120 IPR003871 -
Trre6g05495 525 Gene3D - 118 252 IPR012340 -
Trre6g05495 525 Gene3D - 261 427 IPR012340 -
Trre6g05495 525 CDD RPA1_DBD_C 280 402 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05495 Trre-Chr6 56369830 56372172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05495 16 367 Core DNA Replication Machinery Family AT5G08020 23.035 1.15e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05495 - - tpra:123904946 609.372