Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05494 ATGGCTAAGGTTTGTAAGAAGTTTGATGATGTTGCTGATATCCTTCCTAACCAAGGTTCTACTCGAATCAAGGTTCGTGTTCTTAGGCTCTGGAAGATCCCCTCATTCTTAAATCCATCTGAAATCAGTTCAATTGAGATGGTCTTAATTGATGAAAAGGGTGCCAAGATACATGCTTCTATTAGGAAGCAGTTGCTGTATTTGTTTGAGTCTAAGATTGAAGAAGATGTCATTGGTTTGATGACTGGAATTTCTGCCGAAAGGGAGTATATAAGGGATGGGAAGATAACCAAGATGGTTATCGTTGAGTTAACTGATGCTAGTGGTAAATGTGAGTGTGCTATGTTTGGAGACTATGTTGATCAGTTAAACAAGAAAATGGGCAAGTCTGGTGAAGGTCTTCCAGTCATTGTTGTGCAGTTTGCAAAAATCAAGATTTTCAGGGATCAAGCATCTCTTCAAAATGTAATCAACACTACTAGGATTTTCATAAATCCTGACATCCCTGAAGTGGTTGAATTTAAGAATAGTATTGCTTTGCATGGGATTGATGTGGATTCATTTGTCCCTGTTATTGGTGGAAGAGCCAAACCTGCTATGGATGAAGAGTTTCTTCGTATGCATCCTAAAAAGAAAATTTCTGATCTTAGTGATATGGAGGAGGTTGGTGTATTCTCTGTTTATGGGGTTTTGACTGGGATAGTGCAAGGCGAGGATTGGTGGTACCCAGCCTGCAGGTGCCATAAGGCTGTCCTTCCTGATTCTGGAGCTTACTACTGCAATGGATGCTCCAAGCATGTGTTTCAATGTATCCCTAGGTTTAGGGTTAAGGTTGAGGTATCTGATGGTGATTCTACATGTGTGTTCGTGCTATTTGACTCTGACATGAGTTATATCATGGAGAAATCATGTGCTCATTTTGTGGGGAAAGCAAAGGTGCCCAATGAAGGTTCAGTTCCTGCTGAGTTTAATGCTTTGGTTGGTTCTAAGATGTTATTTATCATTGATAATGGCGTGAACCAATCAAAAATTATTGATGGAACTTTTAGGGTCAAACGTGTCTGCAGTGATTCTCAGATAATTAAAAAATTTCTACTTGAGGGACCTTTCATCACTCCTGTTAAGCCTATGTCTCAGGCAATTGAGATAGAATCAGACAGTGACCTTGCTGATGTCGATGTTGTCGAAGATTCGCAGCCGATGTCCTTCTTGAAGAACATTATTGTTACACCTCCTCTTGATGCCAAGAGCCCAGCTAAAGAAGACCCCATACTGGCTTCTGTTAAGAGGAACTTGGTTGAGCAGTTTGATGGTGCATCGAAGGTTGCAGAAAAGAAACCAATTAGGCGTGTTAGGGTTAAACTTGAGAAGGAATAG 1377 0.4052 MAKVCKKFDDVADILPNQGSTRIKVRVLRLWKIPSFLNPSEISSIEMVLIDEKGAKIHASIRKQLLYLFESKIEEDVIGLMTGISAEREYIRDGKITKMVIVELTDASGKCECAMFGDYVDQLNKKMGKSGEGLPVIVVQFAKIKIFRDQASLQNVINTTRIFINPDIPEVVEFKNSIALHGIDVDSFVPVIGGRAKPAMDEEFLRMHPKKKISDLSDMEEVGVFSVYGVLTGIVQGEDWWYPACRCHKAVLPDSGAYYCNGCSKHVFQCIPRFRVKVEVSDGDSTCVFVLFDSDMSYIMEKSCAHFVGKAKVPNEGSVPAEFNALVGSKMLFIIDNGVNQSKIIDGTFRVKRVCSDSQIIKKFLLEGPFITPVKPMSQAIEIESDSDLADVDVVEDSQPMSFLKNIIVTPPLDAKSPAKEDPILASVKRNLVEQFDGASKVAEKKPIRRVRVKLEKE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05494 458 CDD RPA1_DBD_B_like 76 175 - -
Trre6g05494 458 Gene3D - 194 360 IPR012340 -
Trre6g05494 458 SUPERFAMILY Nucleic acid-binding proteins 73 186 IPR012340 -
Trre6g05494 458 CDD RPA1_DBD_C 213 335 IPR047192 -
Trre6g05494 458 Pfam Replication factor-A C terminal domain 225 318 IPR013955 -
Trre6g05494 458 SUPERFAMILY Nucleic acid-binding proteins 210 335 IPR012340 -
Trre6g05494 458 SUPERFAMILY Nucleic acid-binding proteins 8 83 IPR012340 -
Trre6g05494 458 Gene3D - 56 185 IPR012340 -
Trre6g05494 458 PANTHER OS03G0429900 PROTEIN 15 346 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g05494 458 CDD RPA1_DBD_A_like 22 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05494 Trre-Chr6 56369830 56372172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05494 76 300 Core DNA Replication Machinery Family AT2G06510 22.727 5.57e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05494 - - tpra:123904946 449.899