Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05492 ATGTTTCCGGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGACGAGTCACCTAGGCTAAAGCATGATGCCCCTGGACTTTTGTCGATGGCGATTGCTGACCGTGACACACTTGGTTCTCATTTTATTATCACTTTGAAAGCTGATCATCATCTTGACAGGAAGAATGTGGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTGATAACGAAGGCTATCCATCTGTAACTGTTAAAATAATTAATTGTGGTGAATATAACCAGGATCTGTCTACATCATCAAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAAGTCCCAGTCTTAGTAGAAGCCGTCCTCGTCCACCAAGGAGGAATTTCAGCACGAGTCCTGTTAGAGTAATCGGCAGGAGTCGAAGCAGAAGCATTAGCAGGAGCCCAATAAGGGGCAGGAGGGGGAGAAATGCCAGTAGAAGTCCTGTGATAACTCGTCCTCTCAAAAGTGTCAGCAAGAGCCCTATAAGATCCCACCGGAGGAGTTCTCCCAGAGCATCATCACGAAAAGCAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAATGTAAGTCGCAGTCCAGTTAGATCACCTGCACGAAGCTTAAGCAAAAGCCCTGTAAGAGTGCCAGGAAAGAATTTAAGCCGCGGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCAGGGCACCCAGTAGAAGCCATCGCCACAATTATTCCAGGAGTCCAGGCCCTGCACGTAGGAGAAGGTCATACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCATCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATTTGTCTCGCCCAGCCGGCGATATAGCAGCAGCCGCAACCCAGTCCACATTCGTTCCCCAGTTCGGAGTACTTCTCCAGATCGATCTCGTCCCTCTAATCGTGTAGAAAGGCTTTCATCATATTCCCAGAGCAGGATTCCAGCAAACTCAAGGTCTTCTGTAAAATCACTATCTCCACGCCGCAATTATTCTAGGAGTCCAGGCCCTGCACCTTGGAGAAGGTCATACTGGTATAGTGGAAGAACTGATTGTGACAGATATTCAAATTACAGAAGGTATTCCCTTAGGCATTTAAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGTAGAACACCATTTGTCTCGCCCAGCCGGCGATATTGCAGCAGCCGCAGCCCAGTTCACATTCGTTCCCCAGTTCGGAGTACTTCTCCAGATCGATCTCGTCCCTCTAGGTCTTCTATAGAATCACCATCTTTTATAGGTCCAATGTCTTCCTCTTCAAAAAGAGCGGTCCTCGTGGGTCTGAGGTATATCAATGAAAAGGAATTCGTACTAGATTCACCATGGGCTGATGCCGATGGTTTTTATGATGCCCTGACTAGTAAATGTGACTATCCACCCGAGGACATCATACTTATCTATAATATGTAA 1635 0.4728 MFPGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRDTLGSHFIITLKADHHLDRKNVVFGKLVEGLQVLKRIEDVGDNEGYPSVTVKIINCGEYNQDLSTSSKSRSITPKRRLSKSPSLSRSRPRPPRRNFSTSPVRVIGRSRSRSISRSPIRGRRGRNASRSPVITRPLKSVSKSPIRSHRRSSPRASSRKAISRSPVRVSRKNVSRSPVRSPARSLSKSPVRVPGKNLSRGPVRSTARSLSRSSGRVPSKRSISRSPVRAPSRSHRHNYSRSPGPARRRRSYRYNGRIDRDRYSNYRRYSPRRFRSPPSRGRTPPRYRRRSRTPFVSPSRRYSSSRNPVHIRSPVRSTSPDRSRPSNRVERLSSYSQSRIPANSRSSVKSLSPRRNYSRSPGPAPWRRSYWYSGRTDCDRYSNYRRYSLRHLRSPPPRGRTPPRYRRRSRTPFVSPSRRYCSSRSPVHIRSPVRSTSPDRSRPSRSSIESPSFIGPMSSSSKRAVLVGLRYINEKEFVLDSPWADADGFYDALTSKCDYPPEDIILIYNM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05492 544 MobiDBLite consensus disorder prediction 286 302 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 363 391 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 177 191 - -
Trre6g05492 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 95 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 264 285 - -
Trre6g05492 544 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 94 IPR002130 GO:0000413|GO:0003755
Trre6g05492 544 MobiDBLite consensus disorder prediction 423 492 - -
Trre6g05492 544 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 56 71 IPR002130 GO:0000413|GO:0003755
Trre6g05492 544 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 55 IPR002130 GO:0000413|GO:0003755
Trre6g05492 544 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Trre6g05492 544 MobiDBLite consensus disorder prediction 100 149 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 192 218 - -
Trre6g05492 544 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 4 95 IPR002130 GO:0000413|GO:0003755
Trre6g05492 544 MobiDBLite consensus disorder prediction 330 356 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 236 263 - -
Trre6g05492 544 MobiDBLite consensus disorder prediction 100 397 - -
Trre6g05492 544 SUPERFAMILY Cyclophilin-like 3 98 IPR029000 -
Trre6g05492 544 MobiDBLite consensus disorder prediction 449 492 - -
Trre6g05492 544 Gene3D - 2 97 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05492 Trre-Chr6 56345162 56349478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05492 4 91 U-box Gene Family AT5G67530 42.222 8.35e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05492 K09566 - gmx:100785820 173.326