Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05485 ATGGCAAATCCTACTCAGCATGTCATCATTGATATAACAACTTCAACTTCGGAAACTACTTCTCATGTTATTAGGGCAGAAGATTTAGGTGGTGGTGGAGGTGGTAGATTGCGTGTTTCTCATCAAACTCCAAATGGGTCAAATTCTAGGTTGAGTAGAGGAGATTCATCGTCACGAGGAGGACGTCGTAGGGGTCTGCTGAATTCGGGGTTTTGGATTTCTTTCCAATTTGTTTTCACATTAAGTCAAATTGTTGCTTCTTTTGTTGTTATTTCTTCGTCAAGACATGAACATCCACAAGCTCCATTGTTTACTTGGATTGTTGGTTATGTTATTGGATGTATTGTTTCTCTCCCTTTGCTCATTTGGCGTTATTATTATACCAGAGAACAATATTTGTCTCAAAGTAATTCTACCATTGATGATCCTTCTGGTACACTTCTTTCAAATTCCACCACAATTCAAGGTGAAGATGATGTTCCTGTTGTTGTCGTGGCTTCCTCCAGAACCAATCAAGTTTCATGGTTGATGAATCGGAGACTAAAGATACTCATGGAATACTTAAAAATTGTCGTAGATATATTTTTTGCAATATGGTTTGTTATTGGAAATATATGGATTTTCGGAGGACACTCGTCCGCTAATGAAGCGCCTAACTTGTACCGGTTATGTGTAGTGTTTCTTACTCTTAGTTGTATCGGTTACGCAATGCCCTTCATTCTATGTTTAACAATTTGTTGCTGCCTTCCATGTATAATATCCACTCTTGGAGTCACAGAGGATGTAGCACAGACTCGAGGTGCAACCTCTGAGACTATTAATTCTTTACCAACTCATAAATTCAAAATGATAAAAAGTAAAAACGAAGATGAAAGCAGTCCAACAACCATTGAAGGTGGAATGGTAGCCGAAGGAACTGAAAATGAGCGCATGATATCTGGAGAAGATGCTGTTTGCTGCATATGCATAGTGAACTATGAAAATGAAGATGAATTGAGAGAGTTGCCATGTACACATCTTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAGTGCATTGTGCCCCCTTTGCAAGAGTGAAGTTGGTGGGGATGCAACAAGAATACCCAACGAGGAAAATTCCACCCAACAAAGGGGTGAGAGCAGGGTTGAGAATGGTCTTGCCAATACCTCATTGTAA 1185 0.3949 MANPTQHVIIDITTSTSETTSHVIRAEDLGGGGGGRLRVSHQTPNGSNSRLSRGDSSSRGGRRRGLLNSGFWISFQFVFTLSQIVASFVVISSSRHEHPQAPLFTWIVGYVIGCIVSLPLLIWRYYYTREQYLSQSNSTIDDPSGTLLSNSTTIQGEDDVPVVVVASSRTNQVSWLMNRRLKILMEYLKIVVDIFFAIWFVIGNIWIFGGHSSANEAPNLYRLCVVFLTLSCIGYAMPFILCLTICCCLPCIISTLGVTEDVAQTRGATSETINSLPTHKFKMIKSKNEDESSPTTIEGGMVAEGTENERMISGEDAVCCICIVNYENEDELRELPCTHLFHKECVDKWLKISALCPLCKSEVGGDATRIPNEENSTQQRGESRVENGLANTSL 394
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05485 394 Pfam Ring finger domain 319 360 IPR001841 -
Trre6g05485 394 MobiDBLite consensus disorder prediction 370 394 - -
Trre6g05485 394 SUPERFAMILY RING/U-box 311 365 - -
Trre6g05485 394 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Trre6g05485 394 FunFam E3 ubiquitin-protein ligase 302 369 - -
Trre6g05485 394 MobiDBLite consensus disorder prediction 40 55 - -
Trre6g05485 394 MobiDBLite consensus disorder prediction 367 394 - -
Trre6g05485 394 MobiDBLite consensus disorder prediction 26 61 - -
Trre6g05485 394 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 5 363 - -
Trre6g05485 394 SMART ring_2 319 359 IPR001841 -
Trre6g05485 394 CDD RING-H2_PA-TM-RING 318 360 - -
Trre6g05485 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 366 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g05485 Trre-Chr6 56298961 56301248 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05485 16 364 C3H Transcription Factor Family AT1G80400 48.023 4.77e-121 355