Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05483 ATGAATAAAGCAAAGAGTAGTACTTTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATCACTAGATCAAGAGCAAGGGTTTTGGAATCCTCATCCAAAAATGTTAACATAGTAGAAAATTCCAAAAAGGTTGTATTATCTGAGAATAAAACATGTGTTGTTGATGTTCCTAATGTTCCTCACCGTAAGAGAAGGGCAGCTTTTACTGATGTAACTAACATCACCACAAAACCACATGATAAACGTGTTAAACATTCTAAACTTCAGGCCAAAGGAGTTTACCAGAAGAAGAACACTAAGCTAACTTCAGATGTTACCATCGAAGTTTCATCGGCACAAGAGGATGTTAAAGGGAAGTTAAGTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAATGATACCATTGCTGCAGTAACTTTGGTTCATGAACCAGATGAACAATGTATGTCCAACAACATAACAGAACATGTTATGACGGACACCGCACTTTCAATGCAAGGATCTGTGAATGCTGCTGAACTGTCAATAATCTCTCCTAGTCCAAACAAAGATATAAATATGATTTGTGAGAAGCTAGGAGCCTCAAATTGTCTGACCATTGTGGACATTGATAAAGAGTTAAAGGATTCTGAAGTTTGGAGTGTTTATGCCCCTGATATATACAGCAAAGTTCGAGTCGCCGAGCTTGAAAGGAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTACTGAGGAATATAAGTTGGTTCCAGACACTCTTTACCTTACTGTGAATCTCATCGATCGGTTTCTCTCAACAAAATTGATTCAGAAACACAAGCTCCAGTTGCTTGGTATTACTTGCATGTTCATTGCATCAAAGTACGAAGAAATTTGTGCTCCTCGAGGGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAACAAGAGGTAGTGAAAATGGAGAAAGAAGTTCTAAACCTTTTGCGTTTTCAGTTATGTGTTCCTACAACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGATCCTCGCGTTGAACTAGAATTCCTGGCAAACTATTTAGCTGAGCTTACTCTTGTCGAATACAGCTTCTTACAGTTTCTACCTTCTCTTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACTCTCAACCACTTAGAACACCCTTGGACTCCGACACTGGAGCATCATACAAACTACCGAGCTTCAGAGCTAAAAACAGTTGTTCTTGCATTGGAGAATCTGCAACTTAATACCAAAAGCTGTTCTCTCCATGCTATACGCGAGAAATATAAGCAAGAGAAGTTCAATTGTGTAGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAAGTTCAAGTGTAA 1449 0.3961 MNKAKSSTLCAKDEERPLRITRSRARVLESSSKNVNIVENSKKVVLSENKTCVVDVPNVPHRKRRAAFTDVTNITTKPHDKRVKHSKLQAKGVYQKKNTKLTSDVTIEVSSAQEDVKGKLSEELSTIKMVESNDTIAAVTLVHEPDEQCMSNNITEHVMTDTALSMQGSVNAAELSIISPSPNKDINMICEKLGASNCLTIVDIDKELKDSEVWSVYAPDIYSKVRVAELERRPSTNYMEKLQQDISPSMRGILIDWLVEVTEEYKLVPDTLYLTVNLIDRFLSTKLIQKHKLQLLGITCMFIASKYEEICAPRGEEFCFITDNTYTKQEVVKMEKEVLNLLRFQLCVPTTKTFLRRFIQAAQSSYKDPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHLEHPWTPTLEHHTNYRASELKTVVLALENLQLNTKSCSLHAIREKYKQEKFNCVAKLSPKPVQSLFQVQV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05483 482 CDD CYCLIN_AtCycA-like_rpt2 349 463 - -
Trre6g05483 482 SMART Cyclin_C_2 349 472 IPR004367 -
Trre6g05483 482 Gene3D - 220 468 - -
Trre6g05483 482 PIRSF Cyclin_A_B_D_E 22 481 IPR046965 GO:0016538|GO:0044772
Trre6g05483 482 SUPERFAMILY Cyclin-like 348 471 IPR036915 -
Trre6g05483 482 ProSitePatterns Cyclins signature. 251 282 IPR006671 -
Trre6g05483 482 PANTHER CYCLINS 178 464 IPR039361 -
Trre6g05483 482 SUPERFAMILY Cyclin-like 213 347 IPR036915 -
Trre6g05483 482 FunFam Mitotic cyclin 6 234 334 - -
Trre6g05483 482 Gene3D - 234 347 - -
Trre6g05483 482 SMART cyclin_7 353 441 IPR013763 -
Trre6g05483 482 SMART cyclin_7 256 340 IPR013763 -
Trre6g05483 482 Pfam Cyclin, C-terminal domain 349 471 IPR004367 -
Trre6g05483 482 Pfam Cyclin, N-terminal domain 220 347 IPR006671 -
Trre6g05483 482 FunFam Cyclin A1 336 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05483 Trre-Chr6 56282795 56287014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05483 2 478 Core Cell Cycle Gene Families AT5G25380 49.177 3.13e-144 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05483 K06627 - gmx:547780 630.172