Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05482 ATGGATAGTGCTTTTGATTTGCTTGGTGCTGTTACTCCTGGAAAAGATTCATGGCGTTTCAAAGTTCGTGTGCTTCGTTTATGGAATACCTACTCTTTTTTGAAACCTGATGTGGTGAATTCCCTTGAGATGGTCTTGATTGATGAAAAGGGTTCCAAAATTCATGCTTCCATTCGTCGTCAGCTGTTGTATTTGTTCCGTGATAAAATCTTTGAGGGGAAGGTTTACAAGATGTCTCATTTCACTGTTGGACCAGAATCCGGTTTGTATCGCACTACTGATCATCCTTATAAACTTATATTTGAGATGAAAACAAAAGTTCAACTCTCAGAGAGTAAGAAAATCGATGAATATGGACTGTCATTGTCCACTATTGGAGCTGTTAAAGGTTATGGAGCTGGGCATGATTTCTTAGTTGATGTAGTTGCTTTGGTTACTTCAACTTCTCCTGAGAAGGAGTATGTTCGTGATGGGAAGGTGACCAAGATGGTTGTTCTTCAAATTATTGATAATAGCGGTCATTGTGAGTGTGCTTTATTTGGGTCTTACGTTGATGAACTTCAAAGAATGCTTGCAAATGCTGGAGGTAGTTTGCCTGTGCTTGTGATTCAGTTTGCCAAAATCAAGGATTTTCGTGGAAATGTTTCTATTCAAAATGTCTTGAATGCTACTAGGATTTATATTAATCCTTCAATGCCAGAAGCTGATGCTTTCAAGGAAGGCCTTTCTATTGTTGGTATTGTTCTTTCTACTGCTCTACCCACTGTTAGTGTTAATGCTAGACCTTCTCTTGAGGAAGACTTTTTGTTGAAGTATCCAAAAACTTCCATCTCTGATTTACTTGACATCAACAAGGATGGTATCTATGTTGTTGGTGGGATTGTTGATGGGTTGGTGGATCCTGAAGATTGGTGGTATGCTGCGTGTAGTTGCCATAGGAGTGTTTCTGCTGATTCTGGTGCATACTATTGCCATCATTGTGTCAAACATGTTTTCAGAATGGTTCCAAGGTTTAGGCTGAAGTTAAGGGTTAGTGATGGATCTGGTCAAGCTGTGTTTGTTCTTTTTGATGGAGATGTAAATTTCCTATTGGAGAAACATTGCCATGAGTTGGTTTCTGTGCCTAAGTCAAAGAATGCTGGATATTATCCTCCAGAATTGGAGTTGCTCAAAGGGATGAAATTGTTGTTTAAAGTTGAGAAAAGTCCTAGGATTGGTTCTATATTGTTTGATGGTTCCTTCAGGGTAAAGAGGGTATGCAGTGATATGTCCATTATTGATGCTTTTGATTCGGATTTTCTGAATGAAAATTCTGATTCTGATAGTGATGATGATGATGATGAAACCATTGGAACTTCTGTTCCTCATTTATGGCATTTGGCTTATTCAATTGCAATCAGTCTTTCACCAATTGCTTTCGGCTCTAGGTATTTTGCAGAGAAGAATTAA 1449 0.3851 MDSAFDLLGAVTPGKDSWRFKVRVLRLWNTYSFLKPDVVNSLEMVLIDEKGSKIHASIRRQLLYLFRDKIFEGKVYKMSHFTVGPESGLYRTTDHPYKLIFEMKTKVQLSESKKIDEYGLSLSTIGAVKGYGAGHDFLVDVVALVTSTSPEKEYVRDGKVTKMVVLQIIDNSGHCECALFGSYVDELQRMLANAGGSLPVLVIQFAKIKDFRGNVSIQNVLNATRIYINPSMPEADAFKEGLSIVGIVLSTALPTVSVNARPSLEEDFLLKYPKTSISDLLDINKDGIYVVGGIVDGLVDPEDWWYAACSCHRSVSADSGAYYCHHCVKHVFRMVPRFRLKLRVSDGSGQAVFVLFDGDVNFLLEKHCHELVSVPKSKNAGYYPPELELLKGMKLLFKVEKSPRIGSILFDGSFRVKRVCSDMSIIDAFDSDFLNENSDSDSDDDDDETIGTSVPHLWHLAYSIAISLSPIAFGSRYFAEKN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05482 482 SUPERFAMILY Nucleic acid-binding proteins 123 247 IPR012340 -
Trre6g05482 482 CDD RPA1_DBD_B_like 140 239 - -
Trre6g05482 482 Gene3D - 114 244 IPR012340 -
Trre6g05482 482 SUPERFAMILY Nucleic acid-binding proteins 276 401 IPR012340 -
Trre6g05482 482 CDD RPA1_DBD_C 277 399 IPR047192 -
Trre6g05482 482 Pfam Replication factor-A C terminal domain 299 382 IPR013955 -
Trre6g05482 482 Gene3D - 7 109 IPR012340 -
Trre6g05482 482 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Trre6g05482 482 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Trre6g05482 482 CDD RPA1_DBD_A_like 21 107 - -
Trre6g05482 482 PANTHER OS03G0429900 PROTEIN 7 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g05482 482 Gene3D - 272 424 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05482 Trre-Chr6 56272773 56279296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05482 8 364 Core DNA Replication Machinery Family AT5G08020 23.324 1.50e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05482 - - tpra:123893724 551.977