Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05479 ATGGCGATGCTGAGAATGGTTCACTCAAACTCACAGTCTCACAACAACAACAACAATGAGAACAACACTCACTTGCTCAAACCAGTACTCCGTGATTTTCTCGGCATGAAACCTACTGATACTCCCACCGACCTTAGGTTACCGGAGGCATCAGCCTCAGCTTCCTCCGCCGGTGCTCGTGGCCCTTTCTCCTCCACTTCTGAAACCGCTTCTGAAAAGCAGGTATCGAATCATCTCGAGGGAGTTCCATACTATGGTCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAATAGACTAGTGGGGAATAAGAGAAGTAATTCTGATTCTTCATTTATGGGTTCCTCTAGAGATGCCTTTCAATTGGTCCCTGATTCCTTCCAAAACTCACATTTTATGAAGGTCCTCCGAAATGCGTCTGGAGGAGAAAGGTCTAGAAGGCCTAATGATGATGACGTGTTGCTTAGTATGCAGTCAATGAAGCCATCTTCTAGTTCTCAGATATTTCATCCTCCCGCCAACACTAAGTTTGATGCAAATAAATGGGAAAGGTCTATTCTCATGAATGCTGGCCCTTCTGTACAGCATCCTCTGCGTGGAGGACAATTGACTCCTTTTGCACACCAATTAGCTTCAAACAAGATTAGAGATGCCAATGCCGGCCCTTCATTTATCTCTCAGTCTGCCGCTGATGAAGGATCAAGAACTGGAATCAAGGGTCCTGGAATTTTAAGTTCCATAAACACAGGTGCTACTGCTACTGAGAAAATTTCGTCTTCTGTGTTGGTTGGTGGAAGCAGGCCAAAGCTTCTAACTAATATAGTAGAATCCTCCACACCCCCAAGTCAACATGGGCTAACACCTACCACCCGCCAGATGACTATCTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTTCACCCAAACAAGGCAGATGTTATAATGTCTTTGGCTGGATCAAATGGAGGATCTTGGTCAACAACATTCTCGCCGAAATCTGCTGCAAAGTTGGTTAATGATAGTAACTTGCATAGTGGAGAAAATGAAACAGGATTAGTGAGTAACATGGCATTCCAGCAAGAGCTTCATGGGAAGCTGTCTGTTACTGGCAGTTCTAGTCGTGCCGTTGGGCCTGGTGATCGTGTGTCTAATCTAGCTGGTGTAGGGGCACACCACGGAAGCATTTTTGCCAAAGATACGAGAAATCCGGTTCAACCAGCTAATCCCAGTTCCGAAGACAAAAGACCACAGTGA 1257 0.4519 MAMLRMVHSNSQSHNNNNNENNTHLLKPVLRDFLGMKPTDTPTDLRLPEASASASSAGARGPFSSTSETASEKQVSNHLEGVPYYGPRSDFSGTEISNRLVGNKRSNSDSSFMGSSRDAFQLVPDSFQNSHFMKVLRNASGGERSRRPNDDDVLLSMQSMKPSSSSQIFHPPANTKFDANKWERSILMNAGPSVQHPLRGGQLTPFAHQLASNKIRDANAGPSFISQSAADEGSRTGIKGPGILSSINTGATATEKISSSVLVGGSRPKLLTNIVESSTPPSQHGLTPTTRQMTIFYGGQAHVFDDVHPNKADVIMSLAGSNGGSWSTTFSPKSAAKLVNDSNLHSGENETGLVSNMAFQQELHGKLSVTGSSSRAVGPGDRVSNLAGVGAHHGSIFAKDTRNPVQPANPSSEDKRPQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05479 418 SMART tify_2 286 321 IPR010399 -
Trre6g05479 418 ProSiteProfiles Tify domain profile. 286 321 IPR010399 -
Trre6g05479 418 MobiDBLite consensus disorder prediction 394 418 - -
Trre6g05479 418 MobiDBLite consensus disorder prediction 57 76 - -
Trre6g05479 418 MobiDBLite consensus disorder prediction 1 114 - -
Trre6g05479 418 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 91 352 IPR040390 -
Trre6g05479 418 MobiDBLite consensus disorder prediction 402 418 - -
Trre6g05479 418 MobiDBLite consensus disorder prediction 91 114 - -
Trre6g05479 418 Pfam tify domain 288 320 IPR010399 -
Trre6g05479 418 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05479 Trre-Chr6 56262875 56266579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05479 27 319 Tify Gene Family AT4G32570 40.323 1.29e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre6g05479 tify 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05479 - - gmx:100819293 602.823