Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05475 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCAAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAGATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTTCCCCCACAGAGGGATTCTTTGGACGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACCGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCATCACCATCTGTCAGCGAAGAAAGTAGAAGGCTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCACGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAGCATCAACAACAGTCGAGCCTCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCCTCACCAAGTTCAGCACCTTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTCGGCACTGACGGTACCGGAACTCTTACATCATCTTCAAATCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCCCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTTCGTGCAAGCTCTAGCAAAATTGCTTGTTGCCATTTCTCATCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACGATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCTAGTGAGGACTCCGTTAGGATTTGGACTCTTGGTATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCATCACTGCTCTTCATTGGCTGTTATCAGTCATTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2670 0.4472 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDMKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSLNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSSSNQLADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 857 889 IPR001680 GO:0005515
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 804 IPR001680 GO:0005515
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 728 - -
Trre6g05475 889 SUPERFAMILY WD40 repeat-like 603 889 IPR036322 GO:0005515
Trre6g05475 889 Coils Coil 79 99 - -
Trre6g05475 889 Gene3D - 738 889 IPR015943 GO:0005515
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 682 - -
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 636 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 850 889 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 809 848 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 598 637 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 765 803 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 726 762 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 640 679 IPR001680 GO:0005515
Trre6g05475 889 SMART WD40_4 683 723 IPR001680 GO:0005515
Trre6g05475 889 MobiDBLite consensus disorder prediction 91 110 - -
Trre6g05475 889 Gene3D - 584 737 IPR015943 GO:0005515
Trre6g05475 889 FunFam Transcriptional corepressor LEUNIG 733 889 - -
Trre6g05475 889 SMART Lish 8 40 IPR006594 GO:0005515
Trre6g05475 889 CDD WD40 605 889 - -
Trre6g05475 889 MobiDBLite consensus disorder prediction 403 449 - -
Trre6g05475 889 MobiDBLite consensus disorder prediction 126 153 - -
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 732 IPR001680 GO:0005515
Trre6g05475 889 ProSitePatterns Trp-Asp (WD) repeats signature. 666 680 IPR019775 -
Trre6g05475 889 MobiDBLite consensus disorder prediction 527 541 - -
Trre6g05475 889 Pfam WD domain, G-beta repeat 645 679 IPR001680 GO:0005515
Trre6g05475 889 Pfam WD domain, G-beta repeat 607 636 IPR001680 GO:0005515
Trre6g05475 889 Pfam WD domain, G-beta repeat 852 889 IPR001680 GO:0005515
Trre6g05475 889 Pfam WD domain, G-beta repeat 686 723 IPR001680 GO:0005515
Trre6g05475 889 Pfam WD domain, G-beta repeat 768 802 IPR001680 GO:0005515
Trre6g05475 889 Coils Coil 116 141 - -
Trre6g05475 889 MobiDBLite consensus disorder prediction 363 541 - -
Trre6g05475 889 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 857 889 - -
Trre6g05475 889 MobiDBLite consensus disorder prediction 460 520 - -
Trre6g05475 889 Pfam LisH 10 36 IPR006594 GO:0005515
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 772 804 - -
Trre6g05475 889 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 889 - -
Trre6g05475 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 682 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05475 Trre-Chr6 56213469 56220377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05475 684 888 Miscellaneous Gene Families AT5G08390 25.238 1.27e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre6g05475 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05475 - - gmx:100805628 1392.48