Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05474 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCAAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAGATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTTCCCCCACAGAGGGATTCTTTGGACGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACCGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCATCACCATCTGTCAGCGAAGAAAGTAGAAGGCTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCACGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAGCATCAACAACAGTCGAGCCTCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCCTCACCAAGTTCAGCACCTTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTCGGCACTGACGGTACCGGAACTCTTACATCATCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCCCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTTCGTGCAAGCTCTAGCAAAATTGCTTGTTGCCATTTCTCATCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACGATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCTAGTGAGGACTCCGTTAGGATTTGGACTCTTGGTATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCATCACTGCTCTTCATTGGCTGTTATCAGTCATTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2697 0.4468 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPDMKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSLNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 699 741 IPR001680 GO:0005515
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 691 IPR001680 GO:0005515
Trre6g05474 898 Gene3D - 747 898 IPR015943 GO:0005515
Trre6g05474 898 Coils Coil 79 99 - -
Trre6g05474 898 ProSitePatterns Trp-Asp (WD) repeats signature. 675 689 IPR019775 -
Trre6g05474 898 Gene3D - 593 746 IPR015943 GO:0005515
Trre6g05474 898 MobiDBLite consensus disorder prediction 91 110 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 645 IPR001680 GO:0005515
Trre6g05474 898 CDD WD40 614 898 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 813 IPR001680 GO:0005515
Trre6g05474 898 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 898 - -
Trre6g05474 898 SMART Lish 8 40 IPR006594 GO:0005515
Trre6g05474 898 MobiDBLite consensus disorder prediction 363 542 - -
Trre6g05474 898 FunFam Transcriptional corepressor LEUNIG 742 898 - -
Trre6g05474 898 MobiDBLite consensus disorder prediction 403 449 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 699 737 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Trre6g05474 898 MobiDBLite consensus disorder prediction 126 153 - -
Trre6g05474 898 Pfam WD domain, G-beta repeat 777 811 IPR001680 GO:0005515
Trre6g05474 898 Pfam WD domain, G-beta repeat 654 688 IPR001680 GO:0005515
Trre6g05474 898 Pfam WD domain, G-beta repeat 616 645 IPR001680 GO:0005515
Trre6g05474 898 Pfam WD domain, G-beta repeat 861 898 IPR001680 GO:0005515
Trre6g05474 898 Pfam WD domain, G-beta repeat 695 732 IPR001680 GO:0005515
Trre6g05474 898 SUPERFAMILY WD40 repeat-like 612 898 IPR036322 GO:0005515
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 691 - -
Trre6g05474 898 Coils Coil 116 141 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 813 - -
Trre6g05474 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 866 898 - -
Trre6g05474 898 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre6g05474 898 MobiDBLite consensus disorder prediction 460 520 - -
Trre6g05474 898 Pfam LisH 10 36 IPR006594 GO:0005515
Trre6g05474 898 SMART WD40_4 774 812 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 607 646 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 735 771 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 818 857 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 859 898 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 649 688 IPR001680 GO:0005515
Trre6g05474 898 SMART WD40_4 692 732 IPR001680 GO:0005515
Trre6g05474 898 MobiDBLite consensus disorder prediction 527 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05474 Trre-Chr6 56213469 56220377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05474 693 897 Miscellaneous Gene Families AT5G08390 25.238 1.52e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre6g05474 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05474 - - gmx:100805628 1420.22