Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05473 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTAGTTAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCTGGAGGTTTTCTGTTTGAATGGTGGTCGGTTTTCTGGGACATTTTTATTGCAAGGACTAATGAGAAGCACTCCGAGGTGGCTGCATCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAGCAACAACAACAACAGCAGCAGCCTCAATCTCAGCAGTCACAGCATGCACAGCAGCAACAACAGATGCAGATTCAACAACTTATGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGAACCAGCAACAGGCACAATCGCAGCAGCAGCCACAACCACAACAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCTGGAACTGCAAATTCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTTCCCCCACAGAGGGATTCTTTGGACGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGTCAGCCTTCAGGCACCAAATTTCTTGATTTCAGGCAAGTTTTGCATGGCACTGCTGGCGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACCGGATATGAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCCTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTTCGCTCTGGTTTACTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTTGCACAACAGAGTTTGGCATCACCATCTGTCAGCGAAGAAAGTAGAAGGCTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCGAACCCTGGGGGTGATGTGTTATCGAATGTTGGATCACCTCTTCACGGCGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAACAACAGCAGCAGCATCAACAACAGTCGAGCCTCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAGGTAGGGGGAGGTGGTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACGGCAAATACGGCAGGCCCCTCACCAAGTTCAGCACCTTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCCTTGCCTCATAATAGTAGTTCTTCAAAGCCTCTAATGATGTTCGGCACTGACGGTACCGGAACTCTTACATCATCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCCCAAGATGATACAGACCCTAGAGACCCTGTTGGCCATTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTTCGTGCAAGCTCTAGCAAAATTGCTTGTTGCCATTTCTCATCTGATGGAAAGTTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCCCTCCGCACTTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTCTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGTCATACAAAGACGATAAATTCTGTATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCTAGTGAGGACTCCGTTAGGATTTGGACTCTTGGTATGGGAAGTGAAGGAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCATGTGTTTTCCATCCAACATTTCCATCACTGCTCTTCATTGGCTGTTATCAGTCATTGGAGCTATGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTATGGAAGTAA 2718 0.4459 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQPQSQQSQHAQQQQQMQIQQLMLQRHAQQQQQQQQNQQQAQSQQQPQPQQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGTKFLDFRQVLHGTAGGMSPQVQARSQQLPGSTPDMKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPGGDVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSLNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSSSSKPLMMFGTDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSVCWDPSGELMASASEDSVRIWTLGMGSEGECVHELSCNGSKFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05473 905 SUPERFAMILY WD40 repeat-like 619 905 IPR036322 GO:0005515
Trre6g05473 905 MobiDBLite consensus disorder prediction 370 548 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 748 IPR001680 GO:0005515
Trre6g05473 905 FunFam Transcriptional corepressor LEUNIG 749 905 - -
Trre6g05473 905 Gene3D - 754 905 IPR015943 GO:0005515
Trre6g05473 905 Coils Coil 79 99 - -
Trre6g05473 905 MobiDBLite consensus disorder prediction 534 548 - -
Trre6g05473 905 ProSitePatterns Trp-Asp (WD) repeats signature. 682 696 IPR019775 -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 788 820 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 873 905 - -
Trre6g05473 905 MobiDBLite consensus disorder prediction 91 110 - -
Trre6g05473 905 MobiDBLite consensus disorder prediction 247 263 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Trre6g05473 905 MobiDBLite consensus disorder prediction 410 456 - -
Trre6g05473 905 Gene3D - 600 753 IPR015943 GO:0005515
Trre6g05473 905 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 905 - -
Trre6g05473 905 SMART Lish 8 40 IPR006594 GO:0005515
Trre6g05473 905 CDD WD40 621 905 - -
Trre6g05473 905 Pfam LisH 10 36 IPR006594 GO:0005515
Trre6g05473 905 MobiDBLite consensus disorder prediction 126 153 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 788 820 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 742 778 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 656 695 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 699 739 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 781 819 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 866 905 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 825 864 IPR001680 GO:0005515
Trre6g05473 905 SMART WD40_4 614 653 IPR001680 GO:0005515
Trre6g05473 905 MobiDBLite consensus disorder prediction 467 527 - -
Trre6g05473 905 Coils Coil 116 141 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 706 744 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 652 IPR001680 GO:0005515
Trre6g05473 905 Pfam WD domain, G-beta repeat 868 905 IPR001680 GO:0005515
Trre6g05473 905 Pfam WD domain, G-beta repeat 784 818 IPR001680 GO:0005515
Trre6g05473 905 Pfam WD domain, G-beta repeat 661 695 IPR001680 GO:0005515
Trre6g05473 905 Pfam WD domain, G-beta repeat 623 652 IPR001680 GO:0005515
Trre6g05473 905 Pfam WD domain, G-beta repeat 702 739 IPR001680 GO:0005515
Trre6g05473 905 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre6g05473 905 MobiDBLite consensus disorder prediction 244 263 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Trre6g05473 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 873 905 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05473 Trre-Chr6 56213469 56220377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05473 700 904 Miscellaneous Gene Families AT5G08390 25.238 1.58e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre6g05473 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05473 - - gmx:100805628 1413.28