Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05470 ATGGAAGAAATTGAAGGTGTTAATTGTTCTAGTGAGAGTCGACCTCCACATCCTAATCCATCTATTGCTTCTGCATTTCGTCAATGTCAACGCAATGATCCTGTCGTTTTGCCATGCAGAAAATCCCTTGTTCGTCACGCTTCTCTTACTAAAATGAAGTTGTCAGCTGAGGATGTTACCGAAGATTGCCAGTCCGATTTCCTTCCAAACCTTCGTTCTGGAGGATATGCTGATATTGGGTTCCGGTCTAGTATGGAGGATGTGTATGTTTGCGTTGACAACTTTATGCAGGATCATGGGGTCAACAAACATGTTATAGATGGACCGAGTGCTTTCTATGGGGTGTTTGATGGACATGGTGGAAAGCATGCAGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTTGATATTGAAAGGATTGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCTGACGCTTGTTCTCTCGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTATTATAGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGTTGTGCCGTCGTGGAAAAGCAATTGACATGTCAAGAGATCACAAACCAGTTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGTTATGTCTACGATGGATATCTTAACGGGCAACTCAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAATGCAAAGATGGTGGACCACTAAGCGCAGAGCCTGAACTCATTACCACAAAACTTACTGCTGAGGACGAATTTCTCATCATAGGCTGCGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCTCGGCGCAGGCTTCAGGAGCATAACGACCCAGCTGTGTGTAGTAAGGATCTGGTTGATGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTTCAGCAGCATCCTCCACCGAATTTGGTAGCACCGCGCTCCAGAGTTCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGAAAAATGA 1119 0.4531 MEEIEGVNCSSESRPPHPNPSIASAFRQCQRNDPVVLPCRKSLVRHASLTKMKLSAEDVTEDCQSDFLPNLRSGGYADIGFRSSMEDVYVCVDNFMQDHGVNKHVIDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDNAFADACSLDAALASGTTALATLIIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPVCMKEQRRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKCKDGGPLSAEPELITTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQHPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLEK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05470 372 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g05470 372 CDD PP2Cc 72 336 IPR001932 -
Trre6g05470 372 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Trre6g05470 372 FunFam Probable protein phosphatase 2C 22 55 339 - -
Trre6g05470 372 SMART PP2C_4 62 334 IPR001932 -
Trre6g05470 372 Pfam Protein phosphatase 2C 80 328 IPR001932 -
Trre6g05470 372 SUPERFAMILY PP2C-like 65 338 IPR036457 -
Trre6g05470 372 ProSiteProfiles PPM-type phosphatase domain profile. 72 336 IPR001932 -
Trre6g05470 372 PANTHER PROTEIN PHOSPHATASE 2C 60 334 IPR015655 GO:0004722|GO:0006470
Trre6g05470 372 Gene3D - 51 340 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05470 Trre-Chr6 56185572 56187982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05470 1 370 PP2C-type Phosphatase Gene Family AT2G25620 65.306 5.84e-180 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trre6g05470 PP2C 3.8e-68 CL0238