Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05462 ATGATGTATGAAAGCAACGACAATTCCGTGGGTGATGATGAGAGAAACATTCTAAACATGATGCAAAATGATAATGGCGATAGTTTTCTTGAGGATCGGCGCAATGTTTTTTTCCCGGATCAGGGCGATAGCCAATACAGCCTCAGCGGTTTTCCCCTCCCTGCCTTCGCCAACGAATTAAGCGCCAGGAGGAATAAACTCCCCAAGTATATTATCTCTCCCCAGAACCGTTATTACAGGTTGTGGCAGGTGTTTTTGGCGCTTTTAGTTTTCTACAGTGCATGGATGTCACCATTTGAATTGGGATTCTTGGATGAACCTTCGTTAGCTCTTTCGATTATCGATAATGCTGTGAATTTTTTATTTTCCATTGATATTGTGTTAACCTTCTTTGTTGCGTATTATGACAAACTTACATATTTGCTTGTGGACAAGCAAGGGAAAATTGTGATGAGATATCTGAAATCATGGTTTCTGCTTGATCTCATTTCCACAATTCCTTATGAATTCGTCAGCCAATTGTTGCCTTCTGACGTCAACATTTATGGCTACTTCGGTCTGCTTCGCCTTTGGCGTCTACATAGAGTCAGTGCCTTGTTTGCAAAATTAGAAAAGGACAGACATTATGACTATTTCTGGTTGCGGTGTTTAAAGCTTATGTGTGTTACTCTATTTGTAACGCATTTTGGTGCCTGCATTTTCTACTTTCTTGCCAACCGTTTTGTCGATGACCGGAGTACAACATGGCTTGGACTTATTTCTGATGTGGATGACAAGGATAACATTACTCTCTACATAACATCGGTATACTGGTCGATGGTCACAATTTCAACACTTGGTTATGGTGATCTACATCCTGTAAATACAAAAGAGAAGATATATTTGATATTCTATGTGCTTGTTAATGTGGCACTTACCTCATACCTCATTGGAAACATGACAAATTTAGTTGTTCATTTCACAAGCAGAACTAGCAAATATAGGGACACAGTGAAAGCTGCCACAAAATTTGCTCAACGAAATAATATACCTACACGGTTGGAAGAACAGATGCTTGCTCAGTTGCTTATGAAGTATAGAACTGATTTAGAAGGAGTGCAGCAACAAGATGTTATTGATTCCCTTCCAAAAGCGATTCGATCTAGCGTCTCTTACTGCTTATTCTATCCAATAATGAACAAAGTATACTTGTTTGCGGGAGTGTCAACAGACCTTACTTTTCAATTGGTTACGGAGATGAAGGCGGAGTATTTTCCTCCAAAGGAAGACGTTGTTTTGGAAAATGAAGCACCAACGGACTTTTATATCTTTGTCACTGGTGGTGCAGAACTTATCAAACGAGTGAATGGAGTAGAACAGGTTGTTGGTAAGATCAATCCAGGAGAGTTAGTTGGCGAAGTAGGAGTTCTAGGTTACATACCGCAGCCATATTCATCCCGAACTACTCGATTGAGCCAAATTTTGCGCCTGGAGCGTACTGTATTTTTGAACCATGTTCGTCAAAGTGTTGGAGATGGGGCAATAATTATGAACAATTTTCTCAATCATTTGGAAACTTCCAGTATTCCAGGGATGGATGCTGTTTTTGCAGAAACAATGGCCATGTTGGCTCGTGGTAAAACAGATCTGCCTATCAGCACATGCTTTGCAGTAAGCAGAAATGACAATGTATTGTTACGTCAGTTGTTGAAGAAGGGATCAGATCCAAATGAAGCAGACAGACGTGGAAGGACAGCGTTGCATATTGCAGCTTCTAATGGCTATGAGAATTGTGTAACTTCGCTTTTACAGTTTGGTGCTGATCCAAATAGAAAAGATTTGGATGGCAATATCCCATTATGGGAAGCAATGAGTGGGGGAAATAAATTTGTCAAGAAACTTCTCATAGACAATGGTGCAAACATATTTTTAACCGATGTAGGGCATTTAGCATGCGTAGCAGCTCGGAAAAATAACACTGAATTGCTCATGGAACTCGTAGAATTTGGTGTGGATGTGACAAAATCTGAAAAAAGTGGAACCACTGCCCTGCATACAGCAGTAAGTGAAGGAAATGTAGAGATAGTGAAGCTACTTGTAGACCTTGGAGCTGAAGTTGATAAGGAAGATAATTGTGGCTGGACTCCAAGGGCTTTGGCAGAACAACAAGGCCATGAAGAAATTAAAAATATATTTCAGAAAATTAAAGAGAACAAACAAAGCACACCTGTTATTCCAATTCCAATACCAGATAATGGTAAGCCTAATGTGCCTTACATAGGAAAGATTCAAAGTGAATCTGTTATGCCTGATATTATTGGATCCCAAGAATGCTTGCTACAACCACATATTCAAGACGAGTTGCCATGTTTAAATGATCAACAAAGACGAAGGGCGAACACCTATCATAATTCAATTTTCGGGATGATCTCTGCTGCTAATCGTAATAAAAAATATCGTGAGGTGTATGAAAGAAACACCGATAATGCTGCGAACATGAATGGATTAGTAGCTAGAGTGACACTTAGTTGTCCTGAAAGAGGTGAACATGGCCGAAAGCTTACTTTTCTGCCCAAGTCCCTTGAAGAACTGCTAGAACTTGGTGCCAAAATGTTTGATATCTCACCCACCAAAATTTTGACCAAAGAAGGAGCTGAAATTGATGATATAGATCTTATAAGAGATGGTGACCACCTTATTATTGCAAATGACTGA 2694 0.3972 MMYESNDNSVGDDERNILNMMQNDNGDSFLEDRRNVFFPDQGDSQYSLSGFPLPAFANELSARRNKLPKYIISPQNRYYRLWQVFLALLVFYSAWMSPFELGFLDEPSLALSIIDNAVNFLFSIDIVLTFFVAYYDKLTYLLVDKQGKIVMRYLKSWFLLDLISTIPYEFVSQLLPSDVNIYGYFGLLRLWRLHRVSALFAKLEKDRHYDYFWLRCLKLMCVTLFVTHFGACIFYFLANRFVDDRSTTWLGLISDVDDKDNITLYITSVYWSMVTISTLGYGDLHPVNTKEKIYLIFYVLVNVALTSYLIGNMTNLVVHFTSRTSKYRDTVKAATKFAQRNNIPTRLEEQMLAQLLMKYRTDLEGVQQQDVIDSLPKAIRSSVSYCLFYPIMNKVYLFAGVSTDLTFQLVTEMKAEYFPPKEDVVLENEAPTDFYIFVTGGAELIKRVNGVEQVVGKINPGELVGEVGVLGYIPQPYSSRTTRLSQILRLERTVFLNHVRQSVGDGAIIMNNFLNHLETSSIPGMDAVFAETMAMLARGKTDLPISTCFAVSRNDNVLLRQLLKKGSDPNEADRRGRTALHIAASNGYENCVTSLLQFGADPNRKDLDGNIPLWEAMSGGNKFVKKLLIDNGANIFLTDVGHLACVAARKNNTELLMELVEFGVDVTKSEKSGTTALHTAVSEGNVEIVKLLVDLGAEVDKEDNCGWTPRALAEQQGHEEIKNIFQKIKENKQSTPVIPIPIPDNGKPNVPYIGKIQSESVMPDIIGSQECLLQPHIQDELPCLNDQQRRRANTYHNSIFGMISAANRNKKYREVYERNTDNAANMNGLVARVTLSCPERGEHGRKLTFLPKSLEELLELGAKMFDISPTKILTKEGAEIDDIDLIRDGDHLIIAND 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05462 897 ProSiteProfiles Ankyrin repeat region circular profile. 672 704 - -
Trre6g05462 897 Pfam Ion transport protein 80 324 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre6g05462 897 PRINTS EAG/ELK/ERG potassium channel family signature 291 302 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05462 897 PRINTS EAG/ELK/ERG potassium channel family signature 115 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05462 897 PRINTS EAG/ELK/ERG potassium channel family signature 309 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05462 897 PRINTS EAG/ELK/ERG potassium channel family signature 92 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05462 897 PRINTS EAG/ELK/ERG potassium channel family signature 265 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre6g05462 897 SUPERFAMILY Ankyrin repeat 548 727 IPR036770 -
Trre6g05462 897 FunFam Potassium channel KAT3 81 319 - -
Trre6g05462 897 Gene3D - 544 727 IPR036770 -
Trre6g05462 897 Pfam Ankyrin repeats (3 copies) 646 721 IPR002110 GO:0005515
Trre6g05462 897 Pfam Ankyrin repeats (3 copies) 549 639 IPR002110 GO:0005515
Trre6g05462 897 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Trre6g05462 897 PRINTS Ankyrin repeat signature 688 702 IPR002110 GO:0005515
Trre6g05462 897 PRINTS Ankyrin repeat signature 576 591 IPR002110 GO:0005515
Trre6g05462 897 Pfam Cyclic nucleotide-binding domain 417 501 IPR000595 -
Trre6g05462 897 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Trre6g05462 897 SUPERFAMILY cAMP-binding domain-like 322 516 IPR018490 -
Trre6g05462 897 SMART ANK_2a 542 571 IPR002110 GO:0005515
Trre6g05462 897 SMART ANK_2a 575 604 IPR002110 GO:0005515
Trre6g05462 897 SMART ANK_2a 608 637 IPR002110 GO:0005515
Trre6g05462 897 SMART ANK_2a 639 668 IPR002110 GO:0005515
Trre6g05462 897 SMART ANK_2a 672 701 IPR002110 GO:0005515
Trre6g05462 897 Pfam KHA, dimerisation domain of potassium ion channel 832 894 IPR021789 -
Trre6g05462 897 SMART cnmp_10 397 514 IPR000595 -
Trre6g05462 897 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Trre6g05462 897 FunFam Potassium channel KAT2 386 521 - -
Trre6g05462 897 SUPERFAMILY Voltage-gated potassium channels 74 318 - -
Trre6g05462 897 ProSiteProfiles KHA domain profile. 832 897 IPR021789 -
Trre6g05462 897 Gene3D Jelly Rolls 363 521 IPR014710 -
Trre6g05462 897 ProSiteProfiles cAMP/cGMP binding motif profile. 397 495 IPR000595 -
Trre6g05462 897 CDD CAP_ED 397 497 IPR000595 -
Trre6g05462 897 PANTHER POTASSIUM CHANNEL AKT1 44 894 IPR045319 GO:0005249|GO:0006813
Trre6g05462 897 Gene3D - 79 319 - -
Trre6g05462 897 ProSiteProfiles Ankyrin repeat profile. 608 640 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05462 Trre-Chr6 56135287 56140333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05462 44 897 Ion Channels AT2G25600 53.147 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05462 K21867 - gmx:100786870 1034.63