Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05455 ATGAAGGCTATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATCGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATCATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTAATGATGAAGGACATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAGATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAGTCCGAGAGTTCTTCAGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGATAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGAATCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAGGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGTATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGGCACGACCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAAGTCCCAGTCTTAGCAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGCCCTGTTAGAGTAATTGGCAGGAGTCGAAGCAGAAGCATCAACAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTCAGTAGAAGTCCTGTGATAACTCGTCCTCTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGCCGGAGCAGGAGTTCTCCTAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCATGGCACCCAGTAGAAATAATCGCCTTAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAATTTGTCTAGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACACTACCGAGCTCGACGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTACTTCTCCAGGTCGATCTCGTCCCTCTCCTCGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGACTCGGGCCAAAGGTGA 2316 0.4581 MKAMAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHRVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGNDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKRSSKDRRKRRRYHSSESESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRESGSDSDSESNSSSDGESLDTQQKELRRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERYSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPARPMSKSMSISPRRTRSKSRSITPKRRLSKSPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSINRSPVRGRRGRNVSRSPVITRPLKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVMAPSRNNRLSYSRSPSPVRRRTSRGVNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPHYRARRYSRSRSPVRIRSPVRSTSPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05455 771 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 MobiDBLite consensus disorder prediction 694 708 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 178 771 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 320 371 - -
Trre6g05455 771 Coils Coil 319 339 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 408 427 - -
Trre6g05455 771 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 MobiDBLite consensus disorder prediction 384 405 - -
Trre6g05455 771 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 185 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 178 203 - -
Trre6g05455 771 Gene3D - 1 178 IPR029000 -
Trre6g05455 771 MobiDBLite consensus disorder prediction 514 597 - -
Trre6g05455 771 SUPERFAMILY Cyclophilin-like 4 181 IPR029000 -
Trre6g05455 771 MobiDBLite consensus disorder prediction 632 647 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 436 454 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 204 220 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 262 297 - -
Trre6g05455 771 MobiDBLite consensus disorder prediction 736 750 - -
Trre6g05455 771 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 177 - -
Trre6g05455 771 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Trre6g05455 771 MobiDBLite consensus disorder prediction 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05455 Trre-Chr6 56093162 56098116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05455 28 173 U-box Gene Family AT5G67530 41.892 1.44e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05455 K09566 - gmx:100785820 348.206