Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05454 ATGAAGGCTATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATCGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATCATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTAATGATGAAGGACATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAGATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAGTCCGAGAGTTCTTCAGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGATAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGAATCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAGGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGTATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGGCACGACCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAAGTCCCAGTCTTAGCAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGCCCTGTTAGAGTAATTGGCAGGAGTCGAAGCAGAAGCATCAACAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTCAGTAGAAGTCCTGTGATAACTCGTCCTCTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGCCGGAGCAGGAGTTCTCCTAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCATGGCACCCAGTAGAAATAATCGCCTTAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAATTTGTCTAGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACACTACCGAGCTCGACGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTACTTCTCCAGGTCGATCTCGTCCCTCTCCTCGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGACTCGGGCCAAAGGTGA 2265 0.46 MKAMAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHRVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGNDEGHPTVTVKIINCGEYNDGNNHETRKKGKHKRSSKDRRKRRRYHSSESESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRESGSDSDSESNSSSDGESLDTQQKELRRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERYSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPARPMSKSMSISPRRTRSKSRSITPKRRLSKSPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSINRSPVRGRRGRNVSRSPVITRPLKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVMAPSRNNRLSYSRSPSPVRRRTSRGVNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPHYRARRYSRSRSPVRIRSPVRSTSPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05454 754 MobiDBLite consensus disorder prediction 303 354 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 677 691 - -
Trre6g05454 754 Coils Coil 302 322 - -
Trre6g05454 754 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 MobiDBLite consensus disorder prediction 391 410 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 367 388 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 582 602 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 419 437 - -
Trre6g05454 754 SUPERFAMILY Cyclophilin-like 4 181 IPR029000 -
Trre6g05454 754 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 185 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 719 733 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 497 580 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 615 630 - -
Trre6g05454 754 Gene3D - 1 178 IPR029000 -
Trre6g05454 754 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 177 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 187 203 - -
Trre6g05454 754 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Trre6g05454 754 MobiDBLite consensus disorder prediction 245 280 - -
Trre6g05454 754 MobiDBLite consensus disorder prediction 176 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05454 Trre-Chr6 56093162 56098116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05454 28 173 U-box Gene Family AT5G67530 41.892 1.23e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05454 K09566 - gmx:100785820 326.25