Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05453 ATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATCGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATCATCACTTTGAAAGCAGATCATCATCTTGATAGCAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTAATGATGAAGGACATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAGATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAGTCCGAGAGTTCTTCAGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGATAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGAATCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAGGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGTATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGGCACGACCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAAGTCCCAGTCTTAGCAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGCCCTGTTAGAGTAATTGGCAGGAGTCGAAGCAGAAGCATCAACAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTCAGTAGAAGTCCTGTGATAACTCGTCCTCTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGCCGGAGCAGGAGTTCTCCTAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGCAGTCCAGTTAGATCACCTGCACGAAGCCTAAGCAAAAGTCCTGTAAGAGTGTCAAGAAAGAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCATGGCACCCAGTAGAAATAATCGCCTTAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAATTTGTCTAGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACACTACCGAGCTCGACGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTACTTCTCCAGGTCGATCTCGTCCCTCTCCTCGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGACTCGGGCCAAAGCAATGACATGTTGAAAGATTCTAATGCTAGAGTAAGTAAGACAGTACTTGTGAAATTAGGGTGTGGTCTAAGCAGCGGAGTTATTGCGGTATTTGGTCGAATTGGGGAACATTGTCTTTGCCTGCCATGTTTTCGGTAG 2514 0.4562 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHRVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDSRKHVVFGKLVEGLQVLKRIEDVGNDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKRSSKDRRKRRRYHSSESESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRESGSDSDSESNSSSDGESLDTQQKELRRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERYSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPARPMSKSMSISPRRTRSKSRSITPKRRLSKSPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSINRSPVRGRRGRNVSRSPVITRPLKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSVSRSPVRSPARSLSKSPVRVSRKSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVMAPSRNNRLSYSRSPSPVRRRTSRGVNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPHYRARRYSRSRSPVRIRSPVRSTSPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQSNDMLKDSNARVSKTVLVKLGCGLSSGVIAVFGRIGEHCLCLPCFR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05453 837 MobiDBLite consensus disorder prediction 176 201 - -
Trre6g05453 837 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 174 IPR002130 GO:0000413|GO:0003755
Trre6g05453 837 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre6g05453 837 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre6g05453 837 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Trre6g05453 837 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Trre6g05453 837 MobiDBLite consensus disorder prediction 434 452 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 202 218 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 757 771 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 260 295 - -
Trre6g05453 837 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 653 668 - -
Trre6g05453 837 Gene3D - 1 176 IPR029000 -
Trre6g05453 837 MobiDBLite consensus disorder prediction 176 798 - -
Trre6g05453 837 SUPERFAMILY Cyclophilin-like 4 179 IPR029000 -
Trre6g05453 837 MobiDBLite consensus disorder prediction 715 729 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 512 618 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 620 640 - -
Trre6g05453 837 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 183 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 318 369 - -
Trre6g05453 837 Coils Coil 317 337 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 406 425 - -
Trre6g05453 837 MobiDBLite consensus disorder prediction 382 403 - -
Trre6g05453 837 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 175 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05453 Trre-Chr6 56092888 56098107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05453 25 171 U-box Gene Family AT5G67530 41.611 6.04e-21 95.9