Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05452 ATGGCAAAGAAAAAGAATCCTTTGGTGTTTATGGACGTGTCTATTGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTACGATGTTGCTCCCAAGACTGCAGAAAATTTCCGTGCATTATCTACAGGAGAGAGAGGTGTCAGTCCAAATACTGGAAAATCGCTGCATTACAAGGGTTCTTTCTTCCATCGTGTTATAAAAGGCTCTATTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAACTTCCCAGATGAGTCACCTAGGCTTAAGCACGACGCCCCTGGGCTTTTGTCGATGGCGATTGCGGACCGTCACACATTTGGTTCTCATTTTATCATCACTTTGAAAGCAGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGGCTTCAAGTATTGAAGAGAATTGAAGATGTGGGTAATGATGAAGGACATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAACGACGATGGGAAGAAGGTAAATAAATCAAAAACTGGAAAGGATGCATCCAACGAAGGGAATAATCATGAAACACGCAAGAAGGGAAAGCACAAAAGATCTTCAAAAGACCGAAGGAAGAGGAGAAGATACCACTCATCTGAGTCCGAGAGTTCTTCAGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGACCTGTCTTCATCATCTGATATAAGTTCATCTAGTGATGACCGGCGAAGAAAGAGAAAGAGATCCAAGAAAGATAAATATAAACGTGGAAAAAGGAGAGATAAACGCCGTGATAGAAGGCGAAGAAGAAGGGATAAGAGGTCGAAGCGTAGATCAAAAAGGGAATCTGGCAGCGATTCAGATAGTGAGAGTAACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGAGCTGAGGCGAAAAGACCGTTCTCATAAAAAAGCTGAAGTGAAGTCTCTCTCAGCTGTGGAGAAAGATGTTCCCACCATCCATCATAAAAAGGAAGAGGTGGATATGCCAGAGAGTAAGGAAACTATTGTTAAGGAAAATGGAGAGCGGTATAGCAATGGTACTGGAGCTGCCTATAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTGATGGATGATCATTTGGGCAAATCTAGGAGTCGAAGCATGAGCCCGGCACGACCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGACTAGGAGCAAGAGCCGTAGCATTACCCCGAAAAGAAGATTGAGCAAAAGTCCCAGTCTTAGCAGAAGCCCTCCTCGTCCATCAAGGAGGAGTTTGAGCAGGAGCCCTGTTAGAGTAATTGGCAGGAGTCGAAGCAGAAGCATCAACAGGAGCCCAGTAAGGGGCAGGAGGGGGAGAAATGTCAGTAGAAGTCCTGTGATAACTCGTCCTCTCAAAAGTGTCAGCAAGAGCCCTGTAAGATCCCGCCGGAGCAGGAGTTCTCCTAGAGCATCATCACGAAAAACAATCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAGAGTGTAAGTCGCAGTCCAGTTAGATCACCTGCACGAAGCCTAAGCAAAAGTCCTGTAAGAGTGTCAAGAAAGAGTTTAAGTCGCAGTCCAGTTAGATCAACTGCAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCATCAAAGAGAAGCATTAGCCGGAGTCCCGTCATGGCACCCAGTAGAAATAATCGCCTTAGTTATTCTAGGAGTCCAAGCCCTGTACGTAGAAGGACATCTCGTGGAGTTAATTTGTCTAGGAGTGCTTCACCTGATGCTTCGCCAAAGCGTATTAGAAGGGGAAGAGGTTTTAGTGAACGATACTCCTATGCAAGAAGGTATAGAACCCCTTCTAGGTCTCCTGTGAGGTCTTACCGGTACAATGGAAGAATTGATCGTGACAGATATTCAAATTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCACGTGGAAGAACTCCTCCAAGGTACCGAAGGAGGAGCAGAACACCATCTGTCTCGCCCAGCCCACACTACCGAGCTCGACGATATAGCAGAAGCCGCAGCCCAGTTCGCATTCGCTCCCCAGTTCGGAGTACTTCTCCAGGTCGATCTCGTCCCTCTCCTCGTGTAGAAAGGCATTCATCATATTCCCGGAGCAGGAGTCCAGCAAAATCTAGGTCTTTTGTAGAATCACCATCTCCACGAAAAGCAAGTAGAGACAGGTCAGGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCTCGTATGGTGACGGTTCTCCAGACTCGGGCCAAAGCAATGACATGTTGAAAGATTCTAATGCTAGAGTAAGTAAGACAGTACTTGTGAAATTAGGGTGTGGTCTAAGCAGCGGAGTTATTGCGGTATTTGGTCGAATTGGGGAACATTGTCTTTGCCTGCCATGTTTTCGGTAG 2511 0.456 MAKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALSTGERGVSPNTGKSLHYKGSFFHRVIKGSIVKGGDFVNRNGTGGESIYGSNFPDESPRLKHDAPGLLSMAIADRHTFGSHFIITLKADHHLDRKHVVFGKLVEGLQVLKRIEDVGNDEGHPTVTVKIINCGEYNDDGKKVNKSKTGKDASNEGNNHETRKKGKHKRSSKDRRKRRRYHSSESESSSDSDTESSETDSDSDSDLSSSSDISSSSDDRRRKRKRSKKDKYKRGKRRDKRRDRRRRRRDKRSKRRSKRESGSDSDSESNSSSDGESLDTQQKELRRKDRSHKKAEVKSLSAVEKDVPTIHHKKEEVDMPESKETIVKENGERYSNGTGAAYRSDRSEERQPDVMDDHLGKSRSRSMSPARPMSKSMSISPRRTRSKSRSITPKRRLSKSPSLSRSPPRPSRRSLSRSPVRVIGRSRSRSINRSPVRGRRGRNVSRSPVITRPLKSVSKSPVRSRRSRSSPRASSRKTISRSPVRVSRKSVSRSPVRSPARSLSKSPVRVSRKSLSRSPVRSTARSLSRSSGRVPSKRSISRSPVMAPSRNNRLSYSRSPSPVRRRTSRGVNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRIDRDRYSNYRRYSPRRFRSPPPRGRTPPRYRRRSRTPSVSPSPHYRARRYSRSRSPVRIRSPVRSTSPGRSRPSPRVERHSSYSRSRSPAKSRSFVESPSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPDSGQSNDMLKDSNARVSKTVLVKLGCGLSSGVIAVFGRIGEHCLCLPCFR 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05452 836 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 Gene3D - 1 175 IPR029000 -
Trre6g05452 836 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Trre6g05452 836 MobiDBLite consensus disorder prediction 175 200 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 714 728 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 201 217 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 259 294 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 317 368 - -
Trre6g05452 836 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 174 - -
Trre6g05452 836 Coils Coil 316 336 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 652 667 - -
Trre6g05452 836 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 405 424 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 381 402 - -
Trre6g05452 836 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
Trre6g05452 836 MobiDBLite consensus disorder prediction 433 451 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 175 797 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 511 617 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 619 639 - -
Trre6g05452 836 MobiDBLite consensus disorder prediction 756 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05452 Trre-Chr6 56092888 56098107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05452 25 170 U-box Gene Family AT5G67530 41.892 2.14e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05452 K09566 - gmx:100785820 348.206