Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05451 ATGTCAGTATCGTCATCATCATCATCATCACGTATTTTTGACACCATTAATGAATGTCTCACCCTGGTACAATCAGATTCTCATGAAGCTCAGGAGAAAGGCCTTCAAACATTGGCAGCCATCACCAAGGTAAGTCCCCAAAACAGAACTTTGCTAGCTCAAACAGATGGAGCAATCTCAACATTAGCCACACTCACAAATGCTTCCTCCTCCATTATCCAAACCCTTTCCTTGTTGACCCTCTTTAACCTTTCCCTCAACTCTGATCTAAAGCTATCTCTTGCAGATATGGAAACCATTTATCACCTCAATTCCCTCATTAACTCATCATTATCACCATGTTCTCTTGATTCATGCAAACTTGCCTCTTCATTGATTTGTAGTTTAGCTATGTTTGACAAAAACAAAGCCAAATTTGGAGTAGCAGGCACAGTTCAGTTGCTGGTGACGGCTATTGAAAACTCTCTTCTTGACTCTTCTGAAGCTCATCACCTTTTGAGTTCTTTAGCTGAACTTGTTCAGTTTCATGGAAATTGTACTTTGGCCGTTCGAGGCGGAGCGGTTCCAGTGCTGCTACAAGTTGTAAAGAGCACTGATAATAATGAGGATTTAGCTGGAACATCTCTTACTGTTCTTGGTCTCCTTGTGAGGTTTGATGAAGGGTTGAATGCAGTGAAAAAAACAAATGAGATATTAAGTTCAATGTTAAGTGTGTTGAAAGGAAGGTCTTTGTTGTGTAAAGAAGGTGCAGTTGATATTCTTGTTAGACTTTTTGATGATAGTGAAGAATGTGTTAGAGAGGCTTTGTTGTTATCAGAATTCTCAAGTGTGTTGGCTGATCTTTCTGTGAGGGGTTCTGCAAGAGTGAGAGATAAGGCTGATTTGTTAATGAGGAAGATTGCTAAGGTGAGCTTAGAGACTAACATGGAATTAGCATGCTCCCTATATGATTAA 954 0.3983 MSVSSSSSSSRIFDTINECLTLVQSDSHEAQEKGLQTLAAITKVSPQNRTLLAQTDGAISTLATLTNASSSIIQTLSLLTLFNLSLNSDLKLSLADMETIYHLNSLINSSLSPCSLDSCKLASSLICSLAMFDKNKAKFGVAGTVQLLVTAIENSLLDSSEAHHLLSSLAELVQFHGNCTLAVRGGAVPVLLQVVKSTDNNEDLAGTSLTVLGLLVRFDEGLNAVKKTNEILSSMLSVLKGRSLLCKEGAVDILVRLFDDSEECVREALLLSEFSSVLADLSVRGSARVRDKADLLMRKIAKVSLETNMELACSLYD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05451 317 Gene3D - 134 310 IPR011989 -
Trre6g05451 317 PANTHER U BOX DOMAIN-CONTAINING 15 298 - -
Trre6g05451 317 SUPERFAMILY ARM repeat 15 270 IPR016024 -
Trre6g05451 317 Gene3D - 5 117 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05451 Trre-Chr6 56091381 56092334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05451 5 314 U-box Gene Family AT3G46510 25.080 6.13e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05451 - - gmx:121174819 407.142