Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05442 ATGGCAGTGGCGATTCAATGTCTATCATGTGCTCGTTTCGTCACTGTCGGAGGTAACCGATCCTTTCCACTGCAACGGAAACCTCTTCTCTTCTCCTCCACTCTTTCTTCTCGCTCTCAGAATTTCTACTCCTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTATCTCATGTTACCGAAGGGAACGATGAAGAGGAAGATGCATTTGAGTTGCTGTTCAAGCAACTCGAAGAAGATCTCAAAAACGATGATTCATCAAAAGACGATGGCGATGATGATGATGATATAACTGAAGAAGAAATGGCTTTGTTTGAACGTGAATTAGAAGGTTTGTTAGGTGAATTTGAAGCTGAATTGTCGAACTCAGATAGCAGTGAAACAGAAGAAGCTGATAATGATGCTGAGAAAAGTAATGGTGATGGAAATGAGAATTCACTGAAGCTTAGAACTTGGCAATTGAATAGATTGGCTAGAGCCTTGAAAACTGGACGCCGCAAAATAAGTATAAAAACCCTTGCTGCTGATCTCTGTCTTGATAGACATCTTGTTCTTAATTTGCTCCGTAACCCTCCTCCGAATCTTCTGATGCTGAGCCTATCGATACCTGATGAACCCACACCATCAGGAATAGTACCTGAAAATACTCCCGGGGAGACTCTTTATAAAGAAACAAGTGTAGATAATGCAGATCATGAAGAATCTGAATCCAAGTCCAACTTACCTATTCATACCATGCAACAGAATTGGTCATCTCGAAAGAGATTGAAGAAGACCCAACTTGACACTCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATAAGCAATATCGTGCATGTTACAAACATTCCACGGAAAACGGTTATTAAGTGGTTCGAAGACAAACGTGCTGAGGAGGGAGTTCCAGAACGCCGTCTTCCTTACCAGCACTCTGCTCATGAAACTGGTTGA 978 0.4151 MAVAIQCLSCARFVTVGGNRSFPLQRKPLLFSSTLSSRSQNFYSSIVTASSKKKNNKKKLSHVTEGNDEEEDAFELLFKQLEEDLKNDDSSKDDGDDDDDITEEEMALFERELEGLLGEFEAELSNSDSSETEEADNDAEKSNGDGNENSLKLRTWQLNRLARALKTGRRKISIKTLAADLCLDRHLVLNLLRNPPPNLLMLSLSIPDEPTPSGIVPENTPGETLYKETSVDNADHEESESKSNLPIHTMQQNWSSRKRLKKTQLDTLERVYMRSKRPTNAMISNIVHVTNIPRKTVIKWFEDKRAEEGVPERRLPYQHSAHETG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05442 325 SMART HOX_1 253 315 IPR001356 GO:0003677
Trre6g05442 325 MobiDBLite consensus disorder prediction 305 325 - -
Trre6g05442 325 Pfam Homeodomain 256 307 IPR001356 GO:0003677
Trre6g05442 325 SUPERFAMILY Homeodomain-like 252 319 IPR009057 -
Trre6g05442 325 Gene3D - 252 314 - -
Trre6g05442 325 ProSiteProfiles 'Homeobox' domain profile. 251 311 IPR001356 GO:0003677
Trre6g05442 325 MobiDBLite consensus disorder prediction 122 150 - -
Trre6g05442 325 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 48 318 - -
Trre6g05442 325 CDD homeodomain 254 306 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05442 Trre-Chr6 56019880 56022280 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre6g05442 Homeodomain 4.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05442 - - gmx:100798718 335.109