Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05420 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGTTAAAAAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGCAGCAGCAAGAGCATATGATCAAGCTGCAATATTGATGAATGGTCAAAGTGCTAAGACTAATTTTCCAAAGAAACAAGGTGAAGATGTTACTGCTATTGACACCCCTCATAATGGTAGTGGTGATGATTCTTTCTTGTCTCCCAAGGCACTTTCTGAGCTACTTAGTACTAAGCTTAGAAAATATTGTAAAGACCCTTCTCCGTCACTTACTTGTTTGAGGTTAGATAATGATAATTCTCACATTGGAGTTTGGCAAAAAAGAGCTGGAACACATTCTGATTCTAATTGGGTCATGAGAGTTGAACTTGGTGGGAAGAAAAAGACTGTTGAATCAGAGATAGGGTCAAAAGAAGATACTATTGATGGTGGTAATAATAATAATGGTAATGTTGATGATATTGAAAATAGGGTAGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAATTATCCATGTGGTTCAACTTCAAGTAATTAA 627 0.3844 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPKKQGEDVTAIDTPHNGSGDDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDNDNSHIGVWQKRAGTHSDSNWVMRVELGGKKKTVESEIGSKEDTIDGGNNNNGNVDDIENRVVVEEEERVALQMIEELLNWNYPCGSTSSN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05420 208 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Trre6g05420 208 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 149 - -
Trre6g05420 208 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trre6g05420 208 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trre6g05420 208 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05420 Trre-Chr6 55877958 55878687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05420 4 201 AP2-EREBP Transcription Factor Family AT5G25390 60.500 4.51e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05420 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05420 - - lang:109326202 273.092