Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05415 ATGATAGATAACCCGAAATGGAATGAAAACTTTCACATTTATACTGCTCATTCAATTTCCAATATCATATTCACTGTCAAACAAGATAACCCCATTGGAGCAACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAATGGTAACATAGTAAACACATGGATTCAAATATTAGATGTGAATCATCGTCCAATACAAGGTGGTTCCAAAATCCATGTTCAAATTCAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCACAATTTCAAGGAGTTCCTCACACTTTCTTTAAACAAAGTAATGGTTGTCAAATCACTCTTTACCAAGATGCACATGTTATAGATGGTTCTATTCCGTATATTCCGTTGGACGGAGCAGAACGTTACGTGCCAGGAAAATGTTGGGAAGATATTTACAGTGCAATTAATGATGCTAAACATTTTATTTGCATAACTGGTTGGTCTGTTTATACTGAAATAACCTTGATTAGGGACCTAAACAAGTCAACAAGAACAAGCATCACACTTGGAGAGCTTCTGAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGATTTTAAGAAAGATGGTTTGATGGAAACTCATGATCAAGAAACTGGACAGTATTTTAGAAACACAAATGTTCATTGCGTTTTGTGTCCGCGTAATCCTGGTCATGGAAGAAGCATAGTTCAAGGTTTTGAAATTTCAACCATGTTCACTCATCATCAAAAGACTATAATTGTTGATAGTAGAATTGTTGGTTCTGGACAATGGAATAAGAGAACAATAACAAGTTTTGTTGGTGGCATTGATTTGTGTGATGGAAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACTGTCCATCATGATGATTTTCATCAACCAAACTTCCCAGGTGCTTCTATTAAGAAAGGTGGTCCTAGAGAGCCATGGCATGACATTCATTGTAAGCTAGAAGGGCCTGTTGCATGGGATGTGTTATGCAATTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAATAAGAATGTTCCACTCCCTTCAAGCATGCTTAATGAATATAATATTGCTCGTGTATCGAATGTTGCGACGACAAATGAAAACAACAGATGGAATGTTCAGTTGTTTAGATCGATCGACGGTGGTGCTGCTTCAGGTTTCCCTCAAGATCCAAGAGAAGCTTGTGAAAAAGGTCTTGTTAGTGGAAAAGATAACATCATTGATAGAAGTATTCAGGACGCCTACATAAACGCTATTCGACGAGCAAAAAACTTCATCTACATAGAAAATCAGTATTTTCTTGGGAGTTCATATGGTTGGAAATCATCTGATATTAAAGTTGAGGACATTGGTGCTTTACATCTCATACCAAAGGAACTTTCATTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTTTCTGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCTTCAGTTCAAGCTATATTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGATATTGCTGAAGCTCTTCAAAGAAAAGGAATCAGAGCCAACCTAAGAGATTACTTGACATTCTTTTGCCTTGGAAATAGAGAAAGCAAGAAAAATAATGAATATACTCCTACCGAAAAACCAGAACCTGACAGTGATTATAGTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTAATGCCAAAATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCAAACATAAACCAAAGATCAATGGATGGAGCTAGAGACAGTGAGATTGCAATAGGTGCATTCCAACCAAATCATATAGCATCTAATAATAGGACACCAAAAGGACAAATATATGCATTTAGACGTTCATTATGGTATGAACACCTTGGAGATATTGGTGATACAAGCCACTTTGATAATCCAGAAAGTTTGAACTGTATCAAGCTTGTGAACCGTTTTGCTGAGACCAATTGGGACATATACTCAAAGGATACATTTGAGGAATACAAATATTCATTTCATCACCTCATGAGATATCCAATAGAAGTAACCAATAATGGAACCATAACAACTCTTCCAGGATTTGAATGTTTTCCTGATACTAAGGCTAGGATTTTGGGTTCAAAATCTGATTACCTTCCTCCAATTCTTACCACCTAA 2244 0.3645 MIDNPKWNENFHIYTAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVINGNIVNTWIQILDVNHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPQFQGVPHTFFKQSNGCQITLYQDAHVIDGSIPYIPLDGAERYVPGKCWEDIYSAINDAKHFICITGWSVYTEITLIRDLNKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMETHDQETGQYFRNTNVHCVLCPRNPGHGRSIVQGFEISTMFTHHQKTIIVDSRIVGSGQWNKRTITSFVGGIDLCDGRYDTMEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGNKNVPLPSSMLNEYNIARVSNVATTNENNRWNVQLFRSIDGGAASGFPQDPREACEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIAEALQRKGIRANLRDYLTFFCLGNRESKKNNEYTPTEKPEPDSDYSRAQNSRRFMIYVNAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPNHIASNNRTPKGQIYAFRRSLWYEHLGDIGDTSHFDNPESLNCIKLVNRFAETNWDIYSKDTFEEYKYSFHHLMRYPIEVTNNGTITTLPGFECFPDTKARILGSKSDYLPPILTT 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05415 747 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 588 615 IPR001736 GO:0003824
Trre6g05415 747 Gene3D C2 domain 3 91 IPR035892 -
Trre6g05415 747 Pfam Phospholipase D C terminal 665 737 IPR024632 -
Trre6g05415 747 Gene3D Endonuclease Chain A 133 393 - -
Trre6g05415 747 PANTHER PHOSPHOLIPASE D 3 736 IPR015679 -
Trre6g05415 747 SUPERFAMILY Phospholipase D/nuclease 85 367 - -
Trre6g05415 747 FunFam Phospholipase D 401 634 - -
Trre6g05415 747 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 257 296 IPR001736 GO:0003824
Trre6g05415 747 FunFam Phospholipase D delta 133 375 - -
Trre6g05415 747 PIRSF PLD_plant 1 747 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre6g05415 747 Gene3D Endonuclease Chain A 397 637 - -
Trre6g05415 747 SMART pld_4 257 296 IPR001736 GO:0003824
Trre6g05415 747 SMART pld_4 588 615 IPR001736 GO:0003824
Trre6g05415 747 Pfam C2 domain 4 58 IPR000008 -
Trre6g05415 747 SUPERFAMILY Phospholipase D/nuclease 422 658 - -
Trre6g05415 747 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 81 IPR035892 -
Trre6g05415 747 Pfam Phospholipase D Active site motif 589 615 IPR001736 GO:0003824
Trre6g05415 747 Pfam Phospholipase D Active site motif 257 296 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05415 Trre-Chr6 55846826 55849791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05415 4 747 Phospholipase D Gene Family (Wang group) AT3G15730 66.309 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05415 K01115 - gmx:100791688 1198.34