Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05403 ATGTCAAAACCGTGTTTCTGCCGTGTTCAATACATCGGCAAAATCTTACCTGGTACTCAAATTTCACAATTGGATTGGATTGATAGAGAAGGAAAATTTCTCCTCTCACAAAACCAAAATTTTGCTCTCGCTTTTGTAACCACCGCCAACGACACCACCAAGTTTCTATTAGTAATTGTCCATTTATCAAGTACCACCGTGATTTGGACTGCTAATAGAGCAAAACCTGTTTCTTTTTTTTGGTACAAAGCAAAACCTGTTTCTAATTCTGATGAATTTGTTTTTGATAAAAAGGGTAATGCTTTTTTACAAAAAGATGGAGTTTTGATTTGGTCTACAAACACAATTAACAAGGGGGTTTCTTCAATGGTGTTGCAGGATAATGGAAATTTGGTTTTGCTTGGGAGTGATAATAGTACGGTAATTTGGCAAAGTTTTGATTTTCCTACTGATACGTTGTTGTCTGAACAGGTTTTCAAAGAGGGAATGAAACTTACTAGTGAACCTAATTCAAATAATTTGACCTATGTTCTTGAGATTAAATCTGGTAATGTTGTTCTTTCAGCTGCTTTCAAAATTCCACAGGTTTATTGGTCTATGCAGAATGATAACCGTAAACTCATTGATAAGGATGGTCATGTTGTGGTTTCGTCGAATCTAACTGATAATTCTTGGAGATTTTATAATGAGAAAAAATCTTTGTTGTGGCAATTCATTTTCTCTGATCATGTCGTTGTGAATGCAACTTGGATTGCTGTTTTGGGAAGGGATGGTGTTATTACTTTCTCTGGTCTTAACAGTGGTGGATCCGTCGTTGATTCTTCGACAAGGATACCGCACGATCCTTGTGGTACACCCCAGCCTTGTGATCCTTACAATATATGCACAGGCAACCGTAGGTGTAGTTGTCCATCTGTTGTTCCTAGTTGTAAACCCGGTTTTGTTTCTGCTTGTGATGAAAAATCAGAAAAGTCTATTGAATTTCTGAAAGGTGATGATGGGCTTGATTACTTTGCACTTGATTTTCTTCAGCCCTTTTCGAAAACCAATTTGGTCGGTTGTCAAACTTCGTGCCGTGGAAATTGCTCTTGTCTTGCAATGTTCTTTCATACAAGTTCAGGAAACTGTTTCCTGTTGGAAAGTGTAGGAAGTTTTAAGAAATCTGATGACGGCGATTCTGGTTATGTTTCTTACATTAAGGTCTCAAGCAATGGAAACTCAAAAGGAAGTGGAAGCAGAAATAAACACATCATTGCTGTTGTTGTAACTGTCATATTATTATTTGTAATTTCTCTTCTGCTCGTTGTTGGGGTTAGATACTACAGGAAAAAGAAAAGGTTACCGGAGTCTCCTGGAGAATCAGAAGAGGACAATTTCTTGGAGAATTTAACCGGTATGCCGATCCGTTTCCGATACAGAGATCTCGAAGTTGCAACTAATAACTTCTCAGAGAAGCTTGGCTCAGGAGGTTTTGGTTCAGTTTACAAAGGTGCCCTACCTGATGGAACTCAATTAGCTGTGAAGCAGCTAGAAGGTATTGGTCAAGGGAAGAAAGAGTTCAGAGCTGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTGGTAAGGCTCAAAGGTTTTTGTGCTGATGGAACACACAGGCTTCTAGTTTATGAGTTTATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAAAGAGGCGAATTTCTTTTGGATTGGGATACAAGGTTTAACATAGCAGTAGGAACAGCAAAGGGGCTAGCTTATTTACATGAAGAGTGTGACTCAAAGATTGTTCATTGTGACATCAAGCCCGAAAATGTTCTTCTTGATGATCATTTCACGGCTAAAGTTTCAGATTTTGGTTTAGCCAAGCTCATGAATAGAGAACAAAGTCATGTTTTTACAACAATGAGAGGAACACGCGGCTATCTTGCACCTGAATGGATAAAAAAGTATGCAATATCAGAGAAAAGTGATGTATACAGCTATGGAATGGTGTTGCTAGAGATAATCGGAGGAAGGAAGAATTATGATACTAATGAGAGTTCAGAGAAAATATATTTTCCTAATTTTGCTTTTAAGATGATGGAAGAAGGGAAAATGAGAGATATACTTGATTCAGAGCTGAAAATTGATGAGCATGATGATAGAGCTCAATGTGCTATAAGGGTAGCATTGTGGTGCATACAAGAAGACATGTCTATGAGACCTTCCATGACTAAAGTTGTTCAAATGTTGGAAGGTCTTTGTCCTGTTCCTAAATTATCTAGTGAAGGTGGTAACTCTTCTGGTCCATCAGATTGTAATGGTAATGGCGATGATCTATCAGCAGTTCGTCTTTCTGGCCCAAGATAA 2367 0.3794 MSKPCFCRVQYIGKILPGTQISQLDWIDREGKFLLSQNQNFALAFVTTANDTTKFLLVIVHLSSTTVIWTANRAKPVSFFWYKAKPVSNSDEFVFDKKGNAFLQKDGVLIWSTNTINKGVSSMVLQDNGNLVLLGSDNSTVIWQSFDFPTDTLLSEQVFKEGMKLTSEPNSNNLTYVLEIKSGNVVLSAAFKIPQVYWSMQNDNRKLIDKDGHVVVSSNLTDNSWRFYNEKKSLLWQFIFSDHVVVNATWIAVLGRDGVITFSGLNSGGSVVDSSTRIPHDPCGTPQPCDPYNICTGNRRCSCPSVVPSCKPGFVSACDEKSEKSIEFLKGDDGLDYFALDFLQPFSKTNLVGCQTSCRGNCSCLAMFFHTSSGNCFLLESVGSFKKSDDGDSGYVSYIKVSSNGNSKGSGSRNKHIIAVVVTVILLFVISLLLVVGVRYYRKKKRLPESPGESEEDNFLENLTGMPIRFRYRDLEVATNNFSEKLGSGGFGSVYKGALPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEFMANNSLDKWIFKKKRGEFLLDWDTRFNIAVGTAKGLAYLHEECDSKIVHCDIKPENVLLDDHFTAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWIKKYAISEKSDVYSYGMVLLEIIGGRKNYDTNESSEKIYFPNFAFKMMEEGKMRDILDSELKIDEHDDRAQCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCPVPKLSSEGGNSSGPSDCNGNGDDLSAVRLSGPR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05403 788 FunFam Serine/threonine-protein kinase 22 147 - -
Trre6g05403 788 Pfam D-mannose binding lectin 66 159 IPR001480 -
Trre6g05403 788 ProSiteProfiles Bulb-type lectin domain profile. 19 146 IPR001480 -
Trre6g05403 788 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 26 758 - -
Trre6g05403 788 ProSiteProfiles Protein kinase domain profile. 480 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05403 788 SMART blect_4 25 149 IPR001480 -
Trre6g05403 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 202 IPR036426 -
Trre6g05403 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Trre6g05403 788 Gene3D Transferase(Phosphotransferase) domain 1 555 759 - -
Trre6g05403 788 Gene3D - 19 148 IPR036426 -
Trre6g05403 788 Pfam Protein kinase domain 483 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05403 788 CDD B_lectin 31 149 IPR001480 -
Trre6g05403 788 CDD STKc_IRAK 486 753 - -
Trre6g05403 788 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Trre6g05403 788 FunFam serine/threonine-protein kinase PBS1-like 449 554 - -
Trre6g05403 788 MobiDBLite consensus disorder prediction 760 774 - -
Trre6g05403 788 SUPERFAMILY Protein kinase-like (PK-like) 462 751 IPR011009 -
Trre6g05403 788 MobiDBLite consensus disorder prediction 760 788 - -
Trre6g05403 788 FunFam S-receptor-like kinase 5 555 759 - -
Trre6g05403 788 SMART serkin_6 480 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05403 788 CDD PAN_AP_plant 330 402 - -
Trre6g05403 788 PIRSF SRK 4 772 IPR024171 GO:0004674
Trre6g05403 788 Gene3D Phosphorylase Kinase; domain 1 449 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05403 Trre-Chr6 55746362 55748728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05403 412 756 Receptor kinase-like Gene Family AT5G20050 45.777 8.07e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g05403 Pkinase 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05403 - - tpra:123882999 1357.43