Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05393 ATGGACCTTCAATTAGGCCTGACTCTACCAATTCATAGTTCCATTGATGGATTTAATCATAGTGGGAGTGGTTATTTTGAAAACAAAAAGTATGGCAAAAACAAGCGTAGCTTTGAAGAGTCTTTTGGACATTTTTTGAAACCTTTACCTTTATTAGTATGGAGTGGACAACCAAATGAAGAAGTTGATCGCAATAAAAAGAGGAACACAAACATTCACACATCAAATAATGAAGGAGAAAATTATCATTTGGTGGGGTGGCCACCAATTAAATCATGGAGGAAGAAAGAACTTCATGGCTATATAAGGATTGATCATATGCAAGGTAATGAAAATCAAGGTAGACGATCAAAACCTTTATATGTTAAGGTTAACATGGAAGGGGTTGCCATAGGTAGACAAATCAATTTGAGGCTTTACAACTCTTATCATACTCTCAAAGACTCATTGATTAGCATGTTTGTTAAATACCAAAATTGTGAGGAAGATGAAGTAAACTATACACTCACATTTCAGAATATACAAGGGGATTGGCTGCTTATCGGACACATACCATGGCAATCCTTTATTGGTACGGTGCGGCGTTTGGCTATATTGAGGAGTGGAAAATGA 612 0.3627 MDLQLGLTLPIHSSIDGFNHSGSGYFENKKYGKNKRSFEESFGHFLKPLPLLVWSGQPNEEVDRNKKRNTNIHTSNNEGENYHLVGWPPIKSWRKKELHGYIRIDHMQGNENQGRRSKPLYVKVNMEGVAIGRQINLRLYNSYHTLKDSLISMFVKYQNCEEDEVNYTLTFQNIQGDWLLIGHIPWQSFIGTVRRLAILRSGK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05393 203 SUPERFAMILY CAD & PB1 domains 115 196 - -
Trre6g05393 203 Gene3D - 114 203 - -
Trre6g05393 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 201 IPR003311 GO:0005634|GO:0006355
Trre6g05393 203 ProSiteProfiles PB1 domain profile. 119 203 IPR000270 GO:0005515
Trre6g05393 203 Pfam AUX/IAA family 31 159 IPR033389 -
Trre6g05393 203 Pfam AUX/IAA family 165 201 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05393 Trre-Chr6 55639559 55640893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05393 111 201 B3 DNA Binding Superfamily AT3G61830 33.696 2.72e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre6g05393 AUX_IAA 7.5e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05393 K14484 - gmx:100783359 268.085