Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05364 ATGTGCTTACCATTGAGACCCTTGACAAGGTATTTGTATATGAGTAAATTGGTTACACTTCCTGGAACATCAGGTGCACTTTTGCGGCTTGTAATTGATCAGTTGCAGAAGGTAACTCACGAAGGTTGTGTCAACCGGGTACGCTCCATGACACAAAATCCCCACATATGTGCATCTTGGGCAGAATCTGATTATGTGCAGGCAGAGAAAATAGGATTGGAATATATGGATGTTGAAGCTTTGAGGAAGCTAAACAAAAATAAGAAACTGGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGATAATGAAACTAAGGCAATGGTCAAATTCCAACTTAAGAAAGTGATGTGCATGGGAGTAGCTGTTGGCAATGTGTCTAATGTTAGTCGTACATCTTCTACAATTGATTGA 450 0.4 MCLPLRPLTRYLYMSKLVTLPGTSGALLRLVIDQLQKVTHEGCVNRVRSMTQNPHICASWAESDYVQAEKIGLEYMDVEALRKLNKNKKLVKKLAKKYHAFLVVSHQESLEAKDNETKAMVKFQLKKVMCMGVAVGNVSNVSRTSSTID 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05364 149 SUPERFAMILY Ribosomal protein L1 51 139 IPR023674 -
Trre6g05364 149 Gene3D - 53 104 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05364 Trre-Chr6 55438701 55442597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05364 56 139 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 58.716 4.12e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05364 K02865 - csv:101205570 99.3673