Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05354 ATGGCTTATCACAACCAAGACCACCCACTCCATCATTTCACAGACCAACAACAACAACCAACCTCCGATCCTCACAATTCTTTTCAAACCGCACCTAATTGGCTCAACAACGCTCTTCTACGCAACCTCGAAACCAACGTCAACGCTACAACAACCACCACAACAAACAACAACAGTTCCAATTTCCTCAACCTTGAAACCGCCGGTTCTCAATCCTCCGGTCAATGGCTATCCCGTCCGATCCTTCACCGTAATCAAAGCGAAGTCATCGACAACATCGCCGGAGATAACCTTAAGACGGCGGAAAGCGGCGAGACAGCGGCGGAGGAAGGAGTTATGAACTGGCAGAAAGCGAAATACAAAGGTGAAATAATGGCTCATCCGCTTTACGAACAGCTTCTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCTGTTGATCAGTTGCCAAGAATCGATGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCCTTTGGACAGGGCATGCTTGATGATGATAACAAACAACTCGACCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAACAGTCTTTACAAAGTCTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCCGAGGACGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGTGGTATGGATGGTTCAGATAATAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAAAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCCGGTGATACGACCTCGGTTCTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAGGATAAAGCAAGGTTGGTGCAAGAAACAGGTTTACAATTGAAACAGATAAATAATTGGTTTATCAATCAAAGGAAGAGAAATTGGCACAGCAATCCTTCAACTTCCAATGTCTTGAAGAGCAAGCGCAAGAGGTATCTATCTAATTATTTTTTTCCTAATTAA 1179 0.4427 MAYHNQDHPLHHFTDQQQQPTSDPHNSFQTAPNWLNNALLRNLETNVNATTTTTTNNNSSNFLNLETAGSQSSGQWLSRPILHRNQSEVIDNIAGDNLKTAESGETAAEEGVMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFGQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGMDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKRYLSNYFFPN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05354 392 ProSiteProfiles 'Homeobox' domain profile. 306 369 IPR001356 GO:0003677
Trre6g05354 392 SMART ELK_2 286 307 IPR005539 GO:0003677
Trre6g05354 392 SMART HOX_1 308 373 IPR001356 GO:0003677
Trre6g05354 392 MobiDBLite consensus disorder prediction 226 245 - -
Trre6g05354 392 Pfam KNOX1 domain 120 161 IPR005540 GO:0003677|GO:0005634
Trre6g05354 392 Pfam ELK domain 286 307 IPR005539 GO:0003677
Trre6g05354 392 ProSiteProfiles ELK domain profile. 286 306 IPR005539 GO:0003677
Trre6g05354 392 FunFam homeobox protein knotted-1-like 3 isoform X1 307 368 - -
Trre6g05354 392 Gene3D - 307 368 - -
Trre6g05354 392 SMART KNOX2_2 171 227 IPR005541 GO:0003677|GO:0005634
Trre6g05354 392 MobiDBLite consensus disorder prediction 1 31 - -
Trre6g05354 392 Pfam KNOX2 domain 178 226 IPR005541 GO:0003677|GO:0005634
Trre6g05354 392 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 370 - -
Trre6g05354 392 SUPERFAMILY Homeodomain-like 308 372 IPR009057 -
Trre6g05354 392 SMART KNOX1_2 118 162 IPR005540 GO:0003677|GO:0005634
Trre6g05354 392 CDD homeodomain 309 370 IPR001356 GO:0003677
Trre6g05354 392 MobiDBLite consensus disorder prediction 12 31 - -
Trre6g05354 392 Pfam Homeobox KN domain 326 365 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05354 Trre-Chr6 55336778 55339619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05354 1 383 Homeobox Transcription Factor Family AT5G25220 64.384 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre6g05354 KNOX2 6.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05354 - - gmx:100810257 585.874