Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05351 ATGAATCTTCTTCTTATGCTTTTCATGGTGCTTCTTCTTCTTTTTATATTGAGTTTCATATGTATATGGATTTACCACAACAATTATTCATCAAAAAAATCCAAAAGAAAAAATGTTCTAAACATAGATGCAGAGAAAGGGAACACACCAGCACATTTTTTGACTAAATTCAGTTCCATTGAGTTGGTTGGTATGAAGAAAGGAATTGTTCCAATAATTGATTACAAACAAATAGAAAAATCAACCAATAATTTTGAGGAAAATAACATCTTGGGTGTTGGAGGTTTTGGGTGTGTTTACAAGGCACAATTTGATGAAAATTTGGATGTTGCTGTCAAGAAACTACATCGTCAAACTCAATATGCTGAGACAGAATTTGAGAATGAGGTGGAATTGTTAAGTAAAATTCAACATCCAAATATAATTTCTTTATTGGGATGTAGCATTAATGGAGACATGAGGTTTATTGTGTGTGAGTTAATGCAAAATGGATCCTTGGAAGCTCAGTTACATGGACCATCTCAAGGCTCAAGATTGACTTGGTATATGAGAATGAAGATTGCTCTTGACACTGCAAGAGGATTAGAATATCTACATGAGCATTGTTACCCTCCGGTGATTCATAGAGATATGAAATCTTCTAACATTCTTTTAGATACAAACTTCAATGCCAAGCTCTCTGATTTTGGTCTAGCTATAATTGATGGGTCCCAAAAGAAGAACATCAAGCTTTCAGGAACATTGGGGTACGTAGCCCCAGAATATCTTTTAGATGGGAAATTGACTGATAAAAGTGATGTGTATGCTTATGGGGTTGTGCTCCTGGAGCTCCTGTTAGGGAGGAAGCCTGTGGAAAAACTGGCACAAGCTCAGTGCCAATCCCTTGTCACATGGGCCATGCCTCAACTCACAGACAGATCCAAACTTCCAAACATTGTTGATCCAGCGATAAAGGATACAATGGATCTCAAACACTTATACCAGGTTGCTGCAGTAGCTGTGCTGTGTGTGCAACCAGAGCCAAGTTACCGCCCATTAATCACAGATGTTCTTCACTCACTTATCCCTCTCGTTCCTGTTGAGCTTGGAGGAACGCTCAGGGTGCCACAATTTATTTCTCAAGACATTCCTGTGAGTTCTAGCCAGTGA 1149 0.3847 MNLLLMLFMVLLLLFILSFICIWIYHNNYSSKKSKRKNVLNIDAEKGNTPAHFLTKFSSIELVGMKKGIVPIIDYKQIEKSTNNFEENNILGVGGFGCVYKAQFDENLDVAVKKLHRQTQYAETEFENEVELLSKIQHPNIISLLGCSINGDMRFIVCELMQNGSLEAQLHGPSQGSRLTWYMRMKIALDTARGLEYLHEHCYPPVIHRDMKSSNILLDTNFNAKLSDFGLAIIDGSQKKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAYGVVLLELLLGRKPVEKLAQAQCQSLVTWAMPQLTDRSKLPNIVDPAIKDTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRVPQFISQDIPVSSSQ 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05351 382 FunFam Protein kinase superfamily protein 51 160 - -
Trre6g05351 382 SMART serkin_6 85 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05351 382 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Trre6g05351 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre6g05351 382 PIRSF ILK 28 357 - -
Trre6g05351 382 CDD STKc_IRAK 91 357 - -
Trre6g05351 382 ProSiteProfiles Protein kinase domain profile. 85 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05351 382 FunFam probable receptor-like protein kinase At1g80640 161 359 - -
Trre6g05351 382 Pfam Protein kinase domain 85 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g05351 382 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Trre6g05351 382 PANTHER OS01G0750732 PROTEIN 15 357 - -
Trre6g05351 382 SUPERFAMILY Protein kinase-like (PK-like) 65 354 IPR011009 -
Trre6g05351 382 Gene3D Transferase(Phosphotransferase) domain 1 161 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05351 Trre-Chr6 55301109 55304131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05351 5 358 Receptor kinase-like Gene Family AT3G58690 44.780 4.20e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trre6g05351 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05351 - - gmx:100784795 579.711