Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05350 ATGGCCAGACCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATTTTAAAAACAAGAATTTGGCTTGGAACATTTGAAACAGCTGAGGATGCAGCAAAAGCATATGATGAAGCTGCAAGACTAATGTGTGGTACAAGAGCAAGAACAAATTTCCCTTACAATCCCAATGTGTCTCAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTTCATAGATGCTACATGGCTTCATTACAAATCACTAGACCAATTTCTCTGCAACAACCTCAGAGAGAATCTTCACAAAGTATCATAAACTCCACAAACAATGTTCCCATGAAAAACAGTGAAGAAATTGACACTACAATGAGACATGAAGAGATGAATGAATCAGAAGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAACAATTTATTAAGCCTCTTGAAGAAGATCACAATCACATTGAACAAATGATTCAAGAATTGCTTCATTATGGGTCTATTGAACTTTGCTCTATTGATTCATGA 567 0.381 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAAKAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQRESSQSIINSTNNVPMKNSEEIDTTMRHEEMNESEGNWVFKKVKVENSQQFIKPLEEDHNHIEQMIQELLHYGSIELCSIDS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05350 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Trre6g05350 188 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Trre6g05350 188 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Trre6g05350 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 116 - -
Trre6g05350 188 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Trre6g05350 188 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Trre6g05350 188 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Trre6g05350 188 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Trre6g05350 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Trre6g05350 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05350 Trre-Chr6 55280983 55281739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05350 1 186 AP2-EREBP Transcription Factor Family AT5G25190 65.608 1.16e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre6g05350 AP2 9.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05350 - - gmx:100804510 273.863