Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05349 ATGGGTACTGCTAAGTCGGCTGTGGATTTAATGGGATCTTCTTCTGAAGTTCATTTTTCTGGATTTCATATGGATGGTTTTGAGAAAAGAGAGGCTAGCACAGAACAACCAACAACATCGGCAACTGACATGTACAACCAACCTTTCATCATAGGTGTTGCTGGGGGTGCAGCATCCGGCAAAAAAACAGTTTGTGATATGATTGTTCAACAGCTTCATGACCAACGAGTTGTGCTCGTTAATCAGGATTCTTTTTACAATAACTTGACTGAGGAAGAACGAGCAAGAGTACAAGATTACAACTTTGATCATCCTGATGCTTTTGATACTGAGGAATTGCTTCGTGTTATGGATAAGTTGAAGCATGGTGAAGCTGTAGATCTTCCAAAGTATGATTTTAAGAGTTACAAAAGTGATGCGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTTCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGACGTGATACCAGCGAGAAGGATCGGGATATTGGAGCAATTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAAAAGTATGCTGATATAATCATACCTCGTGGAGGAGATAATCATGTAGCTGTTGATTTGATTGTTCAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATACGTCATTCAGTCAACATTTCAGATACGGGGCATGCATACCCTTATACGTGATGCTCAGATAACGAAGCATGATTTTGTATTTTATGCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGTTTGGGACATCTTCCATTTACAGAAAAGCAAGTAGTCACTCCCACCGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATTAGAAGTGGGGAGAGTATGGAAAATGCCTTAAGAGCATGCTGTAAAGGTATTAAGATTGGGAAAATTCTGATCCACAGAGAAGGTGACAACGGTCAACAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGAAAGGCATGTGTTACTGTTGGACCCTATCCTCGGCACAGGTAATTCGGCTGTTCAAGCGATTTCTTTACTTATACAAAAGGGTGTACCAGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTTCATGTGGTCTGCAAAAGTTTCCCAAGAATTAAAATAGTGACATCTGAGATAGAGATTGGTTTGAACGAAGATTTCCGTGTCATACCGGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACCGATGATGATGAACAAGTGACGGTTATTTCACAATAA 1431 0.3969 MGTAKSAVDLMGSSSEVHFSGFHMDGFEKREASTEQPTTSATDMYNQPFIIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLTEEERARVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDLPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTSEKDRDIGAILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPILGTGNSAVQAISLLIQKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDEQVTVISQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05349 476 FunFam Uridine kinase 45 249 - -
Trre6g05349 476 PANTHER URIDINE KINASE 32 375 - -
Trre6g05349 476 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Trre6g05349 476 NCBIfam uridine kinase 47 246 IPR000764 -
Trre6g05349 476 PRINTS Uridine kinase signature 78 89 - -
Trre6g05349 476 PRINTS Uridine kinase signature 214 227 - -
Trre6g05349 476 PRINTS Uridine kinase signature 48 65 - -
Trre6g05349 476 PRINTS Uridine kinase signature 178 188 - -
Trre6g05349 476 PRINTS Uridine kinase signature 192 203 - -
Trre6g05349 476 PRINTS Uridine kinase signature 123 138 - -
Trre6g05349 476 CDD PRTases_typeI 323 438 IPR000836 -
Trre6g05349 476 Gene3D - 250 465 IPR029057 -
Trre6g05349 476 FunFam Uridine kinase 250 465 - -
Trre6g05349 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 239 IPR027417 -
Trre6g05349 476 CDD UMPK 50 246 IPR000764 -
Trre6g05349 476 Pfam Uracil phosphoribosyltransferase 264 465 - -
Trre6g05349 476 Pfam Phosphoribulokinase / Uridine kinase family 50 234 IPR006083 GO:0005524|GO:0016301
Trre6g05349 476 Gene3D - 45 249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05349 Trre-Chr6 55263428 55269102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05349 4 468 PRT Gene Family AT4G26510 83.298 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05349 K00876 - gmx:100527893 884.019