Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05346 ATGGAAACACTGACAGTTGAGCCATTGCAGAATCCACAAGAAATTGAAAAACAAAACACTTTTCAAGAAGAAGAAGAAAAAGAGGTGAAGCTATTGGATCTAAATATTCCTAACAAAGATTGCGATCTTGGGTGTAATTCAGAGTCCAATTTAGTCACCTATTTGGACACAGGTAATTCTTCTAAAACATCATTAGAAAATTACACTTTTGGCTCTGAATCATTTTCAGAGCCACGTTTTTTTTCTTGCAACTTCTGCAAGAGAAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAACGCTCACAAAAGAGAGAGGTCAATTGCAAAGAGAAGACAAAGGTCTATAGGAACACACAAGATGAAAGGAACAACTTATGGTATCCCATTTCTTCAAAACCAATTTCATCATAGTTATGCAAATATGGCATCTTTACTACCAATTCATGATGTTAATATTAGTAATAATACTTTAAGACCACTTGGAATTAAGGCTCACTCCATGATTCAGAAGCCTTTTCATAATTATTCATCAAATGGATTTGGAAGCACTTATTATGGACATCATGGTTGGTCAGGACCACTTATGAATCAACAACCTGGAATAGGAAAACTAGCCATGGAAACTTACAAAGAAACAGGATTTTCATCGCGAGGTAATGTTGGTCGATTCGAAGGAGTTAAAAAAGACATGCTCAAACCAGGAACTCATATGACCTTGAAGAGTAATCAAGAAGATGTGAAGAACCTTGACTTATCCTTAAAGCTATAA 774 0.3579 METLTVEPLQNPQEIEKQNTFQEEEEKEVKLLDLNIPNKDCDLGCNSESNLVTYLDTGNSSKTSLENYTFGSESFSEPRFFSCNFCKRKFYSSQALGGHQNAHKRERSIAKRRQRSIGTHKMKGTTYGIPFLQNQFHHSYANMASLLPIHDVNISNNTLRPLGIKAHSMIQKPFHNYSSNGFGSTYYGHHGWSGPLMNQQPGIGKLAMETYKETGFSSRGNVGRFEGVKKDMLKPGTHMTLKSNQEDVKNLDLSLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05346 257 Gene3D Classic Zinc Finger 57 130 - -
Trre6g05346 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Trre6g05346 257 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Trre6g05346 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 257 IPR044246 GO:0009788
Trre6g05346 257 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05346 Trre-Chr6 55224195 55224968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05346 16 257 C2H2 Transcription Factor Family AT5G10970 35.878 3.10e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g05346 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05346 - - tpra:123898424 427.172