Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05338 ATGGCAAAGTGTCACCGGAGCAACGCTGATTCAATAATTCTCGATCACCGTCACCATGCTAAGAACACCACCACCGGTAATTTCCGTCTCTCCGCTTTATTCCGCCGCATCATTTTCGACGCTTTAAGCTGCGGTGGAACATCTCGTCACCGAAATCACCACCGCGAAGAAGCCGTTAGCTGCGTCTCTTCCGTATCGACGGCAAATTTGGCCGCCGGTAGTTATAAAGAAAAGCAACAAGTACGAGAAGATAAGCAAGAGAAGAAGCTATCGGATATTCTGAACATACAGGTGCGTGAAATTGAAGCGGAATCTAAGAAGGAAGAGATATTGACGGAGCTGAAACAAGTGGTGAAGGAATTGCGTGAAGAGGATTCGACGAAACGACGAATTGCGGCGGCGAGAGTTAGGTCACTGGCGAAAGATGATTCAGAAGCGAGAGGCACACTCGCAATGCTTGGAGCAATTTCTCCACTCGTTGGAATGCTTGCTTCAGAAGATCTTCATTCTCAGATCGATTCTCTCTATGCATTGCTCAATCTCGGAATCGGTAACGATGCAAATAAAGCAGCGATTGTGAAAATTGGTGCTGTTCACAAGATGCTGAAGATCATTGAATCATCGTGTGTTGTTGATTTGTCGGTTTCTGAGGCAATCGTTGCGAATTTCCTTGGATTAAGTGCTTTGGATTTGAACAAACCAATAATTGGATCTTCTGGTGCAATACCCTTTCTAGTTAGAACTCTTCAAAATTTAGATAATAGTAGTAAAAGTAGTTCCCAAGTTAAGCAGGATGCTCTTCGGGCTCTTTACAATCTTACGATCAATCAAGCGAACATTTCATTTGTTTTGGAAACTGATTTGGTATCGTTTCTGATAAACTCGATAGAGGATATGGAAGTGAGTGAGAGAGTTCTTTCTATTTTGAGCAATTTCGTGTCGAGTCCGGAAGGTAGAAGAGCTATTAGTGCTGTTAGAGATGCGATCACAATTTTGGTTGATGTATTGAATTGGATAGATTCACCTAAATGTCAAGAGAAGGCTTCATACATTTTGATGATTATGGCACACAAAGCTTATGCTGATAGGCAGGCCATGATTGAGGCAGGGATTGTATCGTCATTGCTTGAGTTGACGCTTGTGGGCACCGCTTTGGCACAGAAAAGGGCGTCAAGGATATTGGAATGTTTTAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAGCTATGATGGTGGAAACTTGGGGTTAACTGTCTCTGCGCCAATTTGTTCCTCGTCGTCTTCTTTTGTGAAGACAGATGGAGGAGGTAAAGAGTATTTAGTGGACGAAGCGAACATCATGAGTGATGAAAAGAAAGCAGTGAAGCAACTAGTTCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTCAAAAGGGCTAACTTGAAGCAAGATTTCGTTCCTTCAGAGCGATTCTCTTCGCTTACTTCAAGTTCGACATCAAAGAGCCTGCCATTTTGA 1500 0.432 MAKCHRSNADSIILDHRHHAKNTTTGNFRLSALFRRIIFDALSCGGTSRHRNHHREEAVSCVSSVSTANLAAGSYKEKQQVREDKQEKKLSDILNIQVREIEAESKKEEILTELKQVVKELREEDSTKRRIAAARVRSLAKDDSEARGTLAMLGAISPLVGMLASEDLHSQIDSLYALLNLGIGNDANKAAIVKIGAVHKMLKIIESSCVVDLSVSEAIVANFLGLSALDLNKPIIGSSGAIPFLVRTLQNLDNSSKSSSQVKQDALRALYNLTINQANISFVLETDLVSFLINSIEDMEVSERVLSILSNFVSSPEGRRAISAVRDAITILVDVLNWIDSPKCQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGTALAQKRASRILECFRVDKGKQVSGSYDGGNLGLTVSAPICSSSSSFVKTDGGGKEYLVDEANIMSDEKKAVKQLVQQSLQNNMMKIVKRANLKQDFVPSERFSSLTSSSTSKSLPF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05338 499 Gene3D - 88 255 IPR011989 -
Trre6g05338 499 SUPERFAMILY ARM repeat 113 397 IPR016024 -
Trre6g05338 499 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 279 IPR000225 GO:0005515
Trre6g05338 499 Gene3D - 256 407 IPR011989 -
Trre6g05338 499 Coils Coil 104 124 - -
Trre6g05338 499 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 499 - -
Trre6g05338 499 SMART arm_5 318 357 IPR000225 GO:0005515
Trre6g05338 499 SMART arm_5 185 228 IPR000225 GO:0005515
Trre6g05338 499 SMART arm_5 143 183 IPR000225 GO:0005515
Trre6g05338 499 SMART arm_5 276 314 IPR000225 GO:0005515
Trre6g05338 499 SMART arm_5 229 275 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05338 Trre-Chr6 55147925 55149665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05338 109 398 U-box Gene Family AT2G23140 32.302 3.05e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05338 - - gmx:100818576 612.838