Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05333 ATGGAACCAACATGTGTGGATACTTCTCTCAACCTTAACATTGTGCCTTCTAGAAACGATACAATCGTTGATACCATGGTTGCTGATCAAGTTTTGGTTGAAGAATTGGAGCGTCTAAGTCATGAGAATAAGAGATTAACTGAGAAGCTGAACCACATGTGTGACAATTATGTTGCTTTGCAAAAACATTTTAGTCAATTTAGTCACACAAATGTTGAAAATGAATTAGCAATGATGACACAATCGCGGAAGAGAAAGGCTGAAAGCATTGAAAAAAATTGTATGAATCAGTTTGGCTATGCTATTGCTGAGAGCAGCACAATTACTACTGATCATGAAGAGACAACATTCAAACACAACAACATTAACTCACCAAAAATTTCCAAGGTTCTTGTACCAACAGATGCATCTAATACAAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAGTATGGTCAGAAAGTTACTAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTGCTCTTTTGCTCCTGGCTGCCCAGTCAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCCTTCCATATTAGTGGCAACATACGAAGGAGAACACAACCATCCACATCACCAAGCACAAATACAAATGAGTAGTAGTTCAAACCAAAGTGAAACAAATTCTACATATTTGGCTCCAAGGAATCCATCTTCAACGCTTGACTTGGTCACACCAAAAAAATTGATAGCAATTGAAGATGCTCAAAAGTCTTCTATGCAGCAGCTATTAATTCACCAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCGCCACAGCACTTGCCACTGCCATTTCTGGAAGAATTTTGGATTTGGAAAAACGATGA 867 0.3852 MEPTCVDTSLNLNIVPSRNDTIVDTMVADQVLVEELERLSHENKRLTEKLNHMCDNYVALQKHFSQFSHTNVENELAMMTQSRKRKAESIEKNCMNQFGYAIAESSTITTDHEETTFKHNNINSPKISKVLVPTDASNTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPGCPVKKKVQRSVEDPSILVATYEGEHNHPHHQAQIQMSSSSNQSETNSTYLAPRNPSSTLDLVTPKKLIAIEDAQKSSMQQLLIHQMATSLTRDPNFATALATAISGRILDLEKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05333 288 FunFam WRKY transcription factor 40 128 205 - -
Trre6g05333 288 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05333 288 SUPERFAMILY WRKY DNA-binding domain 140 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g05333 288 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 282 IPR044810 GO:0003700
Trre6g05333 288 MobiDBLite consensus disorder prediction 200 231 - -
Trre6g05333 288 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05333 288 Coils Coil 29 56 - -
Trre6g05333 288 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g05333 288 MobiDBLite consensus disorder prediction 204 231 - -
Trre6g05333 288 Gene3D WRKY domain 128 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05333 Trre-Chr6 55068312 55070741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05333 6 282 WRKY Transcription Factor Family AT1G80840 45.238 8.81e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g05333 WRKY 4e-24 CL0274