Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05320 ATGGGAATATATCTGAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGCGAAAATGACGGTCTTAGATATGGTTTATCATCTATGCAAGGCTGGCGTACATCAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGGTTCTACTTCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCACCATCAGATGCTCAAAAGTGAAGCATACTCAGTTGGAGATATAGGAACCTCTCTTCAGCAAACATTCTTAAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGTTATCAATCTTGGGAGATAAAATGAACAAGTTTAGTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAACAATGGTATTAGCCGAGCTGATGATTGGGCTTTTGAGGAGGGACCTCATTCTGACTTTGCTGGACCAACTTCAGGAAGCACAGCCTGTGTTGCAGTTGTTAGAAACAACCAACTTGTTGTTGCAAATGCCGGTGATTCACGCTGTGTAATATCTCGAAAGGGGCAGGCGTACAACTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAAAAGGAAAGAATCTTAAAAGGTGGTGGTTTTATTCATGCAGGCCGAATTAATGGCAGTTTAAACCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAATTTCTTCCCGCTGAAAAACAAGTTGTAACTGCCAATCCTGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTGGTAGATTTTGTTCATGAACAATTGCGTTCGGAAACGAAACTTTCTACAGTGTGCGAAAAAGTACTTGACCGGTGTTTGGCACCATCAACTGCTGGTGGCGAAGGATGTGATAACATGACCATGATCTTGGTGCAGTTTAAAAAACCTGCTCAGTCTAGTGCACCAGCAGAAGAGCAATCCTCATCAAACGTAGAAGCTGAAGCACAAGGTGAACCGAAACTGGAAAAAAGTGAAGTTTAG 1089 0.416 MGIYLSTPKTEKFSEDGENDGLRYGLSSMQGWRTSMEDAHAAYTDLDGSTSFFGVYDGHGGKVVAKFCAKFLHHQMLKSEAYSVGDIGTSLQQTFLRMDEMMRGQRGWRELSILGDKMNKFSGMIEGLIWSPRSNNGISRADDWAFEEGPHSDFAGPTSGSTACVAVVRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKGGGFIHAGRINGSLNLARAIGDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDFVHEQLRSETKLSTVCEKVLDRCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPAEEQSSSNVEAEAQGEPKLEKSEV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05320 362 PANTHER PROTEIN PHOSPHATASE 2C 20 328 IPR015655 GO:0004722|GO:0006470
Trre6g05320 362 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Trre6g05320 362 SMART PP2C_SIG_2 28 329 IPR001932 -
Trre6g05320 362 MobiDBLite consensus disorder prediction 335 350 - -
Trre6g05320 362 CDD PP2Cc 23 329 IPR001932 -
Trre6g05320 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Trre6g05320 362 Gene3D - 1 330 IPR036457 -
Trre6g05320 362 SMART PP2C_4 13 327 IPR001932 -
Trre6g05320 362 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Trre6g05320 362 Pfam Protein phosphatase 2C 142 313 IPR001932 -
Trre6g05320 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Trre6g05320 362 MobiDBLite consensus disorder prediction 333 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05320 Trre-Chr6 54977657 54981562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05320 1 341 PP2C-type Phosphatase Gene Family AT2G25070 76.833 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05320 K17499 - zju:107419763 630.557