Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05306 ATGGGATATCTCAATTCTGCTTTGTCATCTTCAAGTCAGGCTCAAGATGATGCACCAGTTAGCGGTGGCGGTCTCAGTCACAATGGAAAGTTTAGCTATGGGTATGCTAGCTCGGCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAACCGTTGGCCTTTTCGGAGTCTTTGATGGTCATGGCGGTATTCGTGCTGCTGAGTATGTTAAGAAAAACTTGTTTAGTAATTTGATCAGTCATCCAAAATTCATTTCTGACACCAAATCAGCAATATCTGATGCATATAATCATACCGACAATGAATATCTGAAATCAGAAAACAATCATCACAAAGATGCAGGATCTACTGCATCTACTGCCATTCTAGTTGGTGATCGTTTGCTTGTTGCAAATGTTGGGGACTCCAGGGCCGTTATATGCAGGGGCGGTACTGCAATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACAGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTCGCGGATCCAGAAATCCAGGAAGAAAAAGTTGACAGTTCTCTTGAGTTTCTTATTCTGGCCAGTGATGGGCTATGGGATGTCGTCACAAATGAGGAAGCTGTTGCTATGATTAAACCAATTGGAGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCAGAGAGGTAGTGCTGACAATATCACTTGTGTCGTTGTTCGTTTCTTGGTGAACCAAGGCACTTCTTCTCAAGTAGCTCCGCGTAATTAA 879 0.4334 MGYLNSALSSSSQAQDDAPVSGGGLSHNGKFSYGYASSAGKRSSMEDFYETRIDGVDGETVGLFGVFDGHGGIRAAEYVKKNLFSNLISHPKFISDTKSAISDAYNHTDNEYLKSENNHHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVTNEEAVAMIKPIGDAEEAAKRLMQEAYQRGSADNITCVVVRFLVNQGTSSQVAPRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05306 292 PANTHER PROTEIN PHOSPHATASE 21 277 IPR015655 GO:0004722|GO:0006470
Trre6g05306 292 CDD PP2Cc 31 278 IPR001932 -
Trre6g05306 292 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Trre6g05306 292 SMART PP2C_4 22 276 IPR001932 -
Trre6g05306 292 Pfam Protein phosphatase 2C 58 271 IPR001932 -
Trre6g05306 292 SMART PP2C_SIG_2 27 278 IPR001932 -
Trre6g05306 292 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g05306 292 ProSiteProfiles PPM-type phosphatase domain profile. 32 278 IPR001932 -
Trre6g05306 292 FunFam probable protein phosphatase 2C 59 24 282 - -
Trre6g05306 292 SUPERFAMILY PP2C-like 26 278 IPR036457 -
Trre6g05306 292 MobiDBLite consensus disorder prediction 1 19 - -
Trre6g05306 292 Gene3D - 24 282 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05306 Trre-Chr6 54906356 54909516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05306 1 290 PP2C-type Phosphatase Gene Family AT4G31750 85.763 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05306 K17506 - vvi:100251928 511.146