Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05305 ATGGCTTCTAAACTATGCGACTATTGCAAATCTGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCTTTCCTCTGCGGCGACTGTGACTCCGAAGTCCACGCTGCTAACAAACTCGCCTCCCGTCATCCTCGCGTCACTCTCTGTGAAGTCTGCGAGCAAGCACCTGCACATGTCACCTGTAAAGCCGATGCAGCTTCTCTATGCATCACCTGCGACCGTGACATCCACTCTGCTAATCCCCTCGCCGCACGTCACGAGCGTATTCCGATCACTCCTTTCTTCGAATCCACCACTGTTAAATCTTTTAACAATAATAACAACCACTACGATGCTGTTAAAGATGAAGCCGAAGCAGCTTCGTGGCTGATCTCCGATCCGAAAGCAGATCTCAACTCTTCTCCTTATATATTCTCCGATTCCGAAGCTATTCCATTTATGGATCTCGATTACGGTGTTATCGAACATAAAAACGACGGTGTAGTTCCTGTTCACGGTAACTTCGATCCTTTCGCTTCTGCTTACAAGAACAACACACATACAGAATTAGAAACACCATCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCGATGGAGGTTGGAGTTGTTCCAGATGGAAACGCCGTATCGGAGATATCAAACTGTGGATACGGTAAGGCGGTGGCGGCGGATCGAGAAGCGAGAGTATTGAGGTATAAGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCTCGTAAAGCTTATGCAGAAACTAGACCAAGAATCAAAGGGAGGTTTGCGAAACGCACCGATGCCGTTGATTCTATTTCTGGATACGGCGTCGTTCCGACATGTTGA 855 0.4819 MASKLCDYCKSATATLYCRPDSAFLCGDCDSEVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHSANPLAARHERIPITPFFESTTVKSFNNNNNHYDAVKDEAEAASWLISDPKADLNSSPYIFSDSEAIPFMDLDYGVIEHKNDGVVPVHGNFDPFASAYKNNTHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYGKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGVVPTC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05305 284 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Trre6g05305 284 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Trre6g05305 284 CDD Bbox1_BBX-like 5 48 - -
Trre6g05305 284 Pfam CCT motif 226 268 IPR010402 GO:0005515
Trre6g05305 284 SMART bboxneu5 49 91 IPR000315 GO:0008270
Trre6g05305 284 SMART bboxneu5 1 48 IPR000315 GO:0008270
Trre6g05305 284 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Trre6g05305 284 ProSiteProfiles CCT domain profile. 226 268 IPR010402 GO:0005515
Trre6g05305 284 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Trre6g05305 284 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 275 IPR045281 GO:0009909
Trre6g05305 284 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05305 Trre-Chr6 54902317 54903271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05305 1 283 C2C2-CO-like Transcription Factor Family AT5G24930 48.760 4.25e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre6g05305 zf-B_box 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05305 - - gmx:100804201 402.134