Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05302 ATGGATTCAAAGAAGAAGAAGGATACTGGAATTGGTGGTTCGAAGAAGAAACAGAAAGGGAAAATAAGAGATGGGTTTGAAGAAAGAGTTGTTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTATTGTTGTTGTTGGTGATAAGAATGGACAAGTTGGTGTTGGTGTTGGTAAAGCTAAAGAAGTTATTTGTGCTGTTCAGAAATCTGCTATTGATGCTAGAAGGAATATTATTAGAGTTCCCATGACTAAGTACTTGAGATTATGGTCACTATAG 303 0.363 MDSKKKKDTGIGGSKKKQKGKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKNGQVGVGVGKAKEVICAVQKSAIDARRNIIRVPMTKYLRLWSL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05302 100 Gene3D - 22 87 - -
Trre6g05302 100 Coils Coil 100 100 - -
Trre6g05302 100 ProSitePatterns Ribosomal protein S5 signature. 43 75 IPR018192 -
Trre6g05302 100 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 6 90 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre6g05302 100 FunFam 30S ribosomal protein S5 14 87 - -
Trre6g05302 100 Pfam Ribosomal protein S5, N-terminal domain 26 90 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre6g05302 100 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g05302 100 ProSiteProfiles S5 double stranded RNA-binding domain profile. 26 89 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre6g05302 100 SUPERFAMILY dsRNA-binding domain-like 23 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05302 Trre-Chr6 54861490 54861792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05302 26 89 Cytoplasmic Ribosomal Protein Gene Family AT1G58380 39.062 6.44e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05302 K02988 - gmx:100820232 127.487