Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05299 ATGATAAATATGCATAATCCAATTAGCTTTGTTTACTTTGTGATATTCATGGTTACTTGTTTGTGTGTAAATGATGGAATATTGGCACAAAGGAATGAGACAGTGGTGGTGGTAAAAGTTGGAGCAGTACTTGATGTTAGCAATGGAACTAATGGTGTTGGGATAATAGGATTGAGCTGCATCAAGATGGCTCTCAAAGATTTTTATGACTCTCATTCTCATTACAAAACTAGAATCCAAATCATTCTCAGAGATTCTCATAAGGACGTTGTCACTGCCGCTGCACACGCTTTGGATCTCATAAAAAATGAGAAAGTGCAAACAATCATGGGACCAACAACAACAATGGAAGCAAATTTCATGATTCAACTAGGAGACAAAGCACATATTCCCATTGTAACATTTTCAGCAACAAGCCCTTCACTATCATCACTTCAAAGTCCATATTTTTTCCAAATATCACAAACTGATTCAGCTCAAGTAAAAGCCATCACCTCAATTATCCTAGCTTTTGGTTGGAAACAAGTGGTCCCCATTTATATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAAGTCAATATCCAAATTCCTTATCTAAGTGCAATTTCACTTTCAGCCACAGATGA 651 0.3625 MINMHNPISFVYFVIFMVTCLCVNDGILAQRNETVVVVKVGAVLDVSNGTNGVGIIGLSCIKMALKDFYDSHSHYKTRIQIILRDSHKDVVTAAAHALDLIKNEKVQTIMGPTTTMEANFMIQLGDKAHIPIVTFSATSPSLSSLQSPYFFQISQTDSAQVKAITSIILAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQSQYPNSLSKCNFTFSHR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05299 216 Pfam Receptor family ligand binding region 60 199 IPR001828 -
Trre6g05299 216 Gene3D - 37 208 - -
Trre6g05299 216 PANTHER OS06G0188250 PROTEIN 12 201 - -
Trre6g05299 216 SUPERFAMILY Periplasmic binding protein-like I 37 200 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05299 Trre-Chr6 54833788 54834983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05299 9 201 Ion Channels AT2G29120 48.187 5.55e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05299 K05387 - lja:Lj1g3v1798780.1 228.794