Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05298 ATGACTACTATATCCACTAGAGTATTTGTTGTGCATATGTCAACAAATCTCGGGTCTAAACTTTTTACCTTAGCAAAAAAAATTGGGATGATGAATCAAGGCTATGTTTGGATAGTAACTGATAGTATGGCTAATTTATTCAATTCATTGGATTTTAATGTGAGGGAATCAATGGGAGGAGTATTGGGTGTTAGGACTTATATACCAAAAACAAATAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTATTGACACAAATTTGAACATTTTTGGTATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCAATTGAGAAAGTTGGAATTGGAAACACCAAATTTGGTTACAATGAGAGCAACACATCAAGCAATTACAACATATATAATTTTGAAAAGTTTGGCATTGCACAAAATAGTGAGAAATTGAGTGAAGCCATGTCAAACACTAAGTTTAATGGTCTTAGTGGTGATTTCAATATTGTTGGTGGGAAGTTACAAGCATCAATATTTGAGATAATTAATATGATTGGTGATGGAGAAAAAAGGGTTGGATTTTGGACACCAAATAAAGGGTTGACTAGAAATTTGGACTCAAAAGGCTTCATGAGCAATAATAGCATATATTCTAGTTCAAAAAATGATCTTGGATCAATCATATGGCCAGGGGATGTGTACTCTATTCCAAAGAGATGGGAAATTCCAACTGTTGGGAAGAAACTGAAGATAGGAGTTCCAGCTAAACTTGGAGACAACTACACTGAATTTTTGAAAATAAAATATGATTATAGTACCAATAAAACAGAAGTTACTGGATTTTGTGTTGATGTCTTCAAAGCTGTCTTGGATATTTTGCCTTATGACTTACCATATGAATTTATTCCATATGCAAAGCCAAATGGTGAGATGGCAGGAAGCTACAATGACTTGATCGCTCAAATTTATTATGAGAACTATGATGCAGTAGTAGGGGATGTAACAATCACTGCAAACAGATCAGAATATGCTGATTTTACAATGCCATTCACAGAATCTGGTGTAACAATGATTGTTTCAATGAAAGACAGCAGGAAGAAAAACGCATGGACTTTTTTGAAGCCACTGACATAG 1140 0.3404 MTTISTRVFVVHMSTNLGSKLFTLAKKIGMMNQGYVWIVTDSMANLFNSLDFNVRESMGGVLGVRTYIPKTNKLDDFRVRWKRKFISDNPTLIDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFGYNESNTSSNYNIYNFEKFGIAQNSEKLSEAMSNTKFNGLSGDFNIVGGKLQASIFEIINMIGDGEKRVGFWTPNKGLTRNLDSKGFMSNNSIYSSSKNDLGSIIWPGDVYSIPKRWEIPTVGKKLKIGVPAKLGDNYTEFLKIKYDYSTNKTEVTGFCVDVFKAVLDILPYDLPYEFIPYAKPNGEMAGSYNDLIAQIYYENYDAVVGDVTITANRSEYADFTMPFTESGVTMIVSMKDSRKKNAWTFLKPLT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05298 379 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 379 IPR015683 -
Trre6g05298 379 Gene3D - 251 376 - -
Trre6g05298 379 FunFam Glutamate receptor 250 371 - -
Trre6g05298 379 Pfam Receptor family ligand binding region 6 188 IPR001828 -
Trre6g05298 379 Pfam Ligated ion channel L-glutamate- and glycine-binding site 273 363 IPR019594 GO:0004970|GO:0016020
Trre6g05298 379 Gene3D - 1 250 - -
Trre6g05298 379 Gene3D - 67 174 - -
Trre6g05298 379 SUPERFAMILY Periplasmic binding protein-like I 5 242 IPR028082 -
Trre6g05298 379 SUPERFAMILY Periplasmic binding protein-like II 228 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05298 Trre-Chr6 54832144 54833759 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05298 1 379 Ion Channels AT2G24720 49.077 3.24e-127 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05298 K05387 - jre:108992307 464.922