Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05297 ATGGTCTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGTTGTATGGTTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGTTTGACTTCCCTCTTAACAGTTGAACAACTAAGGCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATGCCAAAGGTTCTTTTGTTTATGGAATTTTGAAGAACTTGGGTTTTCCAGATTCTCAGCTCATTATTTATCAATCACCTGAAGAATGTAATGATCTTTTCATAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGAGGAAGTTCCCTATGTTAAGCACTTTCTTGGAATTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACAGGTGGTTTTGGCTTTGCTTTTCCAAAAGGCTCGCCTCTGGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAAGACATGGGGTTTCTTCTCTATTAGCAGTCCTAATCTTTGTGATAACATTCATATATCAGCACAAAAATATTTTGTTAAACAATGA 600 0.3633 MVYAHREKVVSNLARFVVVVWFFVVLILVQSYTASLTSLLTVEQLRPAITDVNQLLKNKMNVGYAKGSFVYGILKNLGFPDSQLIIYQSPEECNDLFIKGSVNGGIDAAFEEVPYVKHFLGIYSCSKYVMVEPRFKTGGFGFAFPKGSPLVADISRAILNVTQGDKMKTIEKTWGFFSISSPNLCDNIHISAQKYFVKQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05297 199 Pfam Bacterial extracellular solute-binding proteins, family 3 29 175 IPR001638 -
Trre6g05297 199 SMART GluR_14 6 178 IPR001320 GO:0015276|GO:0016020
Trre6g05297 199 Gene3D - 72 179 - -
Trre6g05297 199 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 179 IPR015683 -
Trre6g05297 199 Pfam Ligand-gated ion channel 4 28 IPR001320 GO:0015276|GO:0016020
Trre6g05297 199 SUPERFAMILY Periplasmic binding protein-like II 30 175 - -
Trre6g05297 199 Gene3D - 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05297 Trre-Chr6 54830230 54832005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05297 1 174 Ion Channels AT5G11210 55.747 3.67e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05297 K05387 - pop:18107522 245.358