Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05296 ATGGTGAAGATGGATAATCCCTCAATTCTGATATTTATGGTTACTTGTTGGTGTGTTCTATTGAGTGGAATGGCACAAACTATAAATGAGAGTAGTGTTGTAGTGAAGGTTGGAGCTGTACTTGATGTTAGCAATGGAACGGTTGGGATAATTGGATTGAGCTGCATCAACATGGCTCTCTCTGATTTCTATGAATCTCATTCTCATTACAAAACTAGAATCCAAATCATCGTTAGGGATTCTCATAAGGATGTTGTCACCGCCGCCGCACATGCTTTGGATCTCATAAAAAATGAGGAAGTGCAAGTCATTATGGGACCATCAACTACAATGGAAGCAAATTTCATGATTCAACTAGGAGACAAAGCACATATTCCCATTGTAACCTTTTCAGCAACAAGTCCTTCATTAGCATCACTTAAAAGTCCATATTTTTTCCAAATATCACAAACTGATTCGGCTCAAGTAAAAGCCATCACCTCAATTATTCAAGCTTTTGGTTGGAAACAAGTTGTTCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCTATATCCAAGCTCCTTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGACATCACTCAAGAGCTTTATAAAATAATGACTAATATATCCACTAGAGTATTTATTGTGCACATGTCACCAAATCTTGGGTCTAAACTTTTTACCTTAGCAAAAAAAATTGGGATGATGAGTGAAGGTTATGTTTGGATAGTAACCGATAGTATGACTAATTTATTCAATTCATTGGATTTTAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATACCAAAAACAAATAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTGTTGACACAAATTTGAACATTTTTGGTATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCAATTGAGAAGGTTGGAATTGGAAACACCAAATTTGGTTTCAATGGGAGTAACACATCAAGCAATTACAACATACCTAATTTTGAAAAGTTTGGTATTGCACAAAATGGTGAAAAATTGAGTGAAGCCTTGTCAAACAGTAGCTTTAATGGTTTTAGTGGTGACTTCAATGTTGTAGGTGGGAAGTTACAAGCATCAAAATTTGAAATAATTAATATTTTTGGTGATGGGGAGAAAAGGGTTGGATTTTGGACACCAAATAAAGGGTTGAGTAGAAATTTGGACTCAAAAGACCTCATGAGCAATAATAGCACATATTCTAGTTCTAAAGATGATCTTGGACCAATCATATGGCCAAGGGATGTGCACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGGAAGAAGTTGAAGATAGGTGTTCCAGTTAAAAGTGGAGATATTAACTACACTGAATTCTTGAGAGTAGCATATGATCATAGTACCAATAAAACACAAGCCACTGGTTTCTGCATTGATGTTTTCACAGCTGTGGTGGAAATTTTACCTTATGACTTACCATATGAATTTGTTCGATATGCAAAGCCTGATGGTGATGAGATGGCTGGAACATACGATGAGTTGATCTATCAACTTTATTATGGGAACTTTGATGCGGTAGTGGGGGATATAACAATCACTGCAAACAGATCCAACAAAGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTCAATGAAAGACAACAGGAAGAAAAATGCATGGGCTTTTTTGAAGCCACTAACATGGGATCTATGGGTAGCATCGGCCTGTTCATTTGTATTCATTGGATTTGTTGTATGGATACTTGAACATAGAGTAAACAACGACTTCAGAGGACCACCCTCTCATCAGATTGGCACAAGCTTATGGTTTTCATTCTCAACTATGGTCTATGCTCACAGAGAAAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGTTGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTAAAGGAATTTTGAAGAACTTGGGTTTCCCAGACTCTAAGCTAATTACTTATCAATCACCAGAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAATTCCATATGTTAAGCACTTCCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGTTTTGGTTATGCTTTTCCAAAAGGTTCACCACTTGTGGCTGACATTTCAAGGGCAATCCTAACTGTGACTCAAGGAAAGAAAATGAAAACAATTGAGAAGAAATGGTTGAAGGAAGCTATTTGTCTAGATTCTAATATAGGAATTTCCTCTAACAACCTTGGACTTGAAAGCTTTTGGGGTCTATTTCTCATTGCAGGGATTGCTTCTCTATTAGCGCTCCTAATCTTTGTGGTAAAATTCCTATATCAACACAAACATATTTGGTTAAACAATGACCAAAATACTTCTATATGGCAACGAGTTTGCATCTTGGTACGGATATTTGATCAAAGAGACTCGAATTGTCACACATTCAAAAAAAGTGAAAATAAAATTAAAAGCAGTAATAGTGCTCGTCATGATGATGATGATTTTGGTGCAGTTGAGGAATCTTTAGCTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCACTTCATGGTGATTTTTGTCCAAACACAGAAATGGGTGTTGTTCAACTTACTAATCAAAAAGTTGCTGCTGAGAGTAACTAA 2931 0.364 MVKMDNPSILIFMVTCWCVLLSGMAQTINESSVVVKVGAVLDVSNGTVGIIGLSCINMALSDFYESHSHYKTRIQIIVRDSHKDVVTAAAHALDLIKNEEVQVIMGPSTTMEANFMIQLGDKAHIPIVTFSATSPSLASLKSPYFFQISQTDSAQVKAITSIIQAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQAYIQAPYLSAISLSATDDDITQELYKIMTNISTRVFIVHMSPNLGSKLFTLAKKIGMMSEGYVWIVTDSMTNLFNSLDFNVRESMEGVLGVRTYIPKTNKLDDFRVRWKRKFISDNPTLVDTNLNIFGIWAYDATIALAMAIEKVGIGNTKFGFNGSNTSSNYNIPNFEKFGIAQNGEKLSEALSNSSFNGFSGDFNVVGGKLQASKFEIINIFGDGEKRVGFWTPNKGLSRNLDSKDLMSNNSTYSSSKDDLGPIIWPRDVHSIPKGWEIPTIGKKLKIGVPVKSGDINYTEFLRVAYDHSTNKTQATGFCIDVFTAVVEILPYDLPYEFVRYAKPDGDEMAGTYDELIYQLYYGNFDAVVGDITITANRSNKVDFTMPYTESGVTMVVSMKDNRKKNAWAFLKPLTWDLWVASACSFVFIGFVVWILEHRVNNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWVFVVLILVQSYTASLTSLLTVEQLRPAITDVNQLLKNKMNVGYLKGSFVKGILKNLGFPDSKLITYQSPEECHELFLKGSVNGGIDAAFDEIPYVKHFLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILTVTQGKKMKTIEKKWLKEAICLDSNIGISSNNLGLESFWGLFLIAGIASLLALLIFVVKFLYQHKHIWLNNDQNTSIWQRVCILVRIFDQRDSNCHTFKKSENKIKSSNSARHDDDDFGAVEESLATHCPPSPSSQTESNVSLHGDFCPNTEMGVVQLTNQKVAAESN 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05296 976 CDD GluR_Plant 470 824 - -
Trre6g05296 976 SMART GluR_14 473 826 IPR001320 GO:0015276|GO:0016020
Trre6g05296 976 FunFam Glutamate receptor 151 307 - -
Trre6g05296 976 SUPERFAMILY Periplasmic binding protein-like II 451 826 - -
Trre6g05296 976 MobiDBLite consensus disorder prediction 936 951 - -
Trre6g05296 976 SUPERFAMILY Periplasmic binding protein-like I 34 463 IPR028082 -
Trre6g05296 976 Gene3D - 594 724 - -
Trre6g05296 976 Gene3D - 473 593 - -
Trre6g05296 976 Gene3D - 729 831 - -
Trre6g05296 976 Gene3D - 153 317 - -
Trre6g05296 976 PIRSF IGluLR_plant 3 961 IPR017103 -
Trre6g05296 976 MobiDBLite consensus disorder prediction 932 951 - -
Trre6g05296 976 Pfam Bacterial extracellular solute-binding proteins, family 3 499 825 IPR001638 -
Trre6g05296 976 FunFam Glutamate receptor 471 594 - -
Trre6g05296 976 Pfam Ligand-gated ion channel 826 856 IPR001320 GO:0015276|GO:0016020
Trre6g05296 976 FunFam Glutamate receptor 2.7 731 831 - -
Trre6g05296 976 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 907 IPR015683 -
Trre6g05296 976 Pfam Receptor family ligand binding region 55 407 IPR001828 -
Trre6g05296 976 CDD PBP1_GABAb_receptor_plant 36 428 IPR044440 -
Trre6g05296 976 Gene3D - 327 472 - -
Trre6g05296 976 FunFam Glutamate receptor 594 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05296 Trre-Chr6 54821532 54827441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05296 3 974 Ion Channels AT2G29110 50.256 0.0 892
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05296 K05387 - tcc:18587654 1101.27