Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05295 ATGGCACAAACTAGAAACAACGAGAGTAGTATTAATGCAGTGAAAGTTGGAGTTGTACTTGATGTTAGCGACGGTACGTTTGGGAAGATAGGTTTGAGCTGCATCAACATGGCACTCTCAGATTTCTATGACTCTCATTCTCATCACAAAACCAGAATCCAAATTGTCGTCAGAGATTCTCATAAGGACGTTGTTACTGCCGCCGCACACGCTTGGGATCTCATAAAAAATGAGGAAGTGCAAGCCATCATGGGACCAAGAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAAACAAAGCACATGTCCCCATTGTAACCTTTTCAGCAACAAGCCCTTCATTAGCATCACTTCAAAGTCCATACTATTTTCAAATATCACAAACTGATTCAGCTCAAGTAAAAGCCATCACCTCAATTATCCTAGCTTTTGGTTGGAAACAGGTTGTCCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCTATATCCAAGTTCCTTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCCATCACTCTAGAGCTTTATAAAATAATGACTACTATATCCACTAGAGTATTTATTGTGCACATGTCACCAAATCTTGGGTCTAAACTTTTTACCTTAGCAAAAAAAATTGGGATGATGAGTGAAGGTTATGTTTGGATAGTAACCGATAGTATGACTAATTTATTCAATTCATTGGATTTTAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCAAAAACAAATAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTGTTGACATAAATTTGAACATTTTTGGTATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAGGTTGGAATTGGAAACACAAAAGTTGGCTACAATGAGAGCAACACATCAAGCAATATGCCAAATTTTGAAAAGTTAGGTATTACACAAAATGGTGAAAAATTGAGTGAAGCTTTATCAAATACTAGCTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGATGGGAAATTACAAGCATCAATATTTGAGATATTTAATGTGATTGGTGATGGAGGAAAAAGGGTTGGATTTTGGACACCAAATAAAGGGTTGGCTAGAAATTTGGAAACAAAAAGCCTAATGAGCAATCATAACATATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATGAACTCTATTCCAAAGGGATGGGAAATTCCAACTATTGGGAAGAAATTGCGGATAGGAGTTCCCGTTAAAAGTGGAGATAACTACACTGAATTCTTGAAAGTAACATATGATAATAGTGCCAATAAAACAGATACCACAGGATTCTGCATTGATGTCTTCAAAGCTGTGGTGGATGTTTTGCCTTATGACTTACCATATGAATTGATTCCATATGCAAACCATGAGGGTCAGATGGCAGGAACATACGATGACTTGATCTCTCAACTTTATTATGGGAAGTATGATGCAATAGTGGGGGATGTAACAATCATTGCAAATAGATCAGAATATGTTGATTTTACAATGCCATACACAGAATCTGGTGTGACAATGCTTGTTCATTTGTATTCATTGGATTTTGTTGTATGGGTTCTTGAACATCGAATAAACAACGATTTCAGGGGACCACCCTCTCATCAGATTGGCACAAGCTTGTGGTTTTCCTTCTCAACTATGGTTTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTTGTTGTATGGCTTTTTGTGGTTCTAATTTTGGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAACTGTTACAGATGTTAAGCAACTTCAAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTAAAGGAATTTTGAAGAACTTGGGTTTCCCAGACTCTAAGCTAATTACTTATCAATCACCAGAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAATTCCATATGTTAAGCACTTCCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAGCCGGTGGTTTTGGCTATGCTTTTCCAAAAGGTTCACCACTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAATGCATGGTTCAAGGAAGCTATTTGTCTAGATTCTAGTACAGAAATTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGTCTATTTCTCATTGCATGGATTGCTTCCCTAGTAGCACTCCTAATCTTTGTGGTAACATTCCTATATCAGCACAAACATATTTGGTTAAACAATGATCAAAATACTTCAATATGGCGACGAGTTTGCATCTTGGTTAGGATATTTGATCAAAGAGACTCGAACTCTCACACATTCAAAAAAAGTGAAAACAAAATTAAAAGCAGTAATAGTCCTCATGATGATGATGATGATATAGGTGCAGTTGAGGCATCTCCAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGTTTTATGGCGATTTTAGTTCAAACACAGAAATGGATCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACAGCCAACATGACCTCATCTACATTTGTAACATCCAGCTCATAA 2811 0.3675 MAQTRNNESSINAVKVGVVLDVSDGTFGKIGLSCINMALSDFYDSHSHHKTRIQIVVRDSHKDVVTAAAHAWDLIKNEEVQAIMGPRTTMEANFVIQLGNKAHVPIVTFSATSPSLASLQSPYYFQISQTDSAQVKAITSIILAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQAYIQVPYLSAISLSATDDAITLELYKIMTTISTRVFIVHMSPNLGSKLFTLAKKIGMMSEGYVWIVTDSMTNLFNSLDFNVRESMEGVLGVRTYIPKTNKLDDFRVRWKRKFISDNPTLVDINLNIFGIWAYDATIALAMAIEKVGIGNTKVGYNESNTSSNMPNFEKLGITQNGEKLSEALSNTSFNGLSGDFNVVDGKLQASIFEIFNVIGDGGKRVGFWTPNKGLARNLETKSLMSNHNIYSSSKDDLGSIIWPGDMNSIPKGWEIPTIGKKLRIGVPVKSGDNYTEFLKVTYDNSANKTDTTGFCIDVFKAVVDVLPYDLPYELIPYANHEGQMAGTYDDLISQLYYGKYDAIVGDVTIIANRSEYVDFTMPYTESGVTMLVHLYSLDFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPTVTDVKQLQKNKMNVGYLKGSFVKGILKNLGFPDSKLITYQSPEECHELFLKGSVNGGIDAAFDEIPYVKHFLGTYSCSKYVMVEPRFKAGGFGYAFPKGSPLVADISRAILNVTQGDKMKTIENAWFKEAICLDSSTEISSNNNLGLESFWGLFLIAWIASLVALLIFVVTFLYQHKHIWLNNDQNTSIWRRVCILVRIFDQRDSNSHTFKKSENKIKSSNSPHDDDDDIGAVEASPGTHCPPSPSSQTESNVSFYGDFSSNTEMDPVNNCEINSQATANMTSSTFVTSSS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05295 936 Gene3D - 685 779 - -
Trre6g05295 936 CDD GluR_Plant 447 772 - -
Trre6g05295 936 Gene3D - 11 139 - -
Trre6g05295 936 FunFam Glutamate receptor 130 286 - -
Trre6g05295 936 SUPERFAMILY Periplasmic binding protein-like I 13 431 IPR028082 -
Trre6g05295 936 FunFam Glutamate receptor 544 672 - -
Trre6g05295 936 Pfam Ligand-gated ion channel 774 805 IPR001320 GO:0015276|GO:0016020
Trre6g05295 936 MobiDBLite consensus disorder prediction 856 906 - -
Trre6g05295 936 CDD PBP1_GABAb_receptor_plant 15 405 IPR044440 -
Trre6g05295 936 Gene3D - 559 672 - -
Trre6g05295 936 MobiDBLite consensus disorder prediction 885 906 - -
Trre6g05295 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 856 IPR015683 -
Trre6g05295 936 FunFam Glutamate receptor 448 564 - -
Trre6g05295 936 FunFam Glutamate receptor 344 447 - -
Trre6g05295 936 Pfam Bacterial extracellular solute-binding proteins, family 3 475 773 IPR001638 -
Trre6g05295 936 FunFam Glutamate receptor 2.7 679 779 - -
Trre6g05295 936 SUPERFAMILY Periplasmic binding protein-like II 426 774 - -
Trre6g05295 936 SMART GluR_14 450 774 IPR001320 GO:0015276|GO:0016020
Trre6g05295 936 PIRSF IGluLR_plant 1 565 IPR017103 -
Trre6g05295 936 PIRSF IGluLR_plant 561 910 IPR017103 -
Trre6g05295 936 Gene3D - 140 318 - -
Trre6g05295 936 MobiDBLite consensus disorder prediction 856 878 - -
Trre6g05295 936 Gene3D - 328 448 - -
Trre6g05295 936 Gene3D - 449 558 - -
Trre6g05295 936 Pfam Receptor family ligand binding region 34 386 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05295 Trre-Chr6 54800982 54805997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05295 8 895 Ion Channels AT2G29120 48.911 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05295 K05387 - tcc:18587654 1068.14