Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05294 ATGGTGAAGATGGATAATCCCTCAATTATGATATTCATGGTTATAACTTGTTGGTTCGTAAATATTTTGGGTGGAATGGCACAAACTAGAAACAACGAGAGTAGTATTAATGCAGTGAAAGTTGGAGTTGTACTTGATGTTAGCGACGGTACGTTTGGGAAGATAGGTTTGAGCTGCATCAACATGGCACTCTCAGATTTCTATGACTCTCATTCTCATCACAAAACCAGAATCCAAATTGTCGTCAGAGATTCTCATAAGGACGTTGTTACTGCCGCCGCACACGCTTGGGATCTCATAAAAAATGAGGAAGTGCAAGCCATCATGGGACCAAGAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAAACAAAGCACATGTCCCCATTGTAACCTTTTCAGCAACAAGCCCTTCATTAGCATCACTTCAAAGTCCATACTATTTTCAAATATCACAAACTGATTCAGCTCAAGTAAAAGCCATCACCTCAATTATCCTAGCTTTTGGTTGGAAACAGGTTGTCCCCATTTACATAGACAATAGTTTTGGTGAAGGACTCATACCTTATTTAACCAATGTTCTTCAACAAGCCTATATCCAAGTTCCTTATCTAAGTGCAATTTCTCTTTCAGCCACAGATGATGCCATCACTCTAGAGCTTTATAAAATAATGACTACTATATCCACTAGAGTATTTATTGTGCACATGTCACCAAATCTTGGGTCTAAACTTTTTACCTTAGCAAAAAAAATTGGGATGATGAGTGAAGGTTATGTTTGGATAGTAACCGATAGTATGACTAATTTATTCAATTCATTGGATTTTAATGTGAGGGAATCAATGGAAGGAGTATTGGGTGTTAGGACTTATATTCCAAAAACAAATAAGCTAGATGATTTTAGAGTTAGATGGAAAAGAAAATTCATAAGTGACAATCCAACACTTGTTGACATAAATTTGAACATTTTTGGTATATGGGCTTATGATGCTACAATTGCATTAGCAATGGCTATTGAGAAGGTTGGAATTGGAAACACAAAAGTTGGCTACAATGAGAGCAACACATCAAGCAATATGCCAAATTTTGAAAAGTTAGGTATTACACAAAATGGTGAAAAATTGAGTGAAGCTTTATCAAATACTAGCTTTAATGGTCTTAGTGGTGATTTCAATGTTGTTGATGGGAAATTACAAGCATCAATATTTGAGATATTTAATGTGATTGGTGATGGAGGAAAAAGGGTTGGATTTTGGACACCAAATAAAGGGTTGGCTAGAAATTTGGAAACAAAAAGCCTAATGAGCAATCATAACATATATTCTAGTTCTAAAGATGATCTTGGATCAATCATATGGCCAGGGGATATGAACTCTATTCCAAAGGGATGGGAAATTCCAACTATTGGGAAGAAATTGCGGATAGGAGTTCCCGTTAAAAGTGGAGATAACTACACTGAATTCTTGAAAGTAACATATGATAATAGTGCCAATAAAACAGATACCACAGGATTCTGCATTGATGTCTTCAAAGCTGTGGTGGATGTTTTGCCTTATGACTTACCATATGAATTGATTCCATATGCAAACCATGAGGGTCAGATGGCAGGAACATACGATGACTTGATCTCTCAACTTTATTATGGGAAGTATGATGCAATAGTGGGGGATGTAACAATCATTGCAAATAGATCAGAATATGTTGATTTTACAATGCCATACACAGAATCTGGTGTGACAATGCTTGTTCATTTGTATTCATTGGATTTTGTTGTATGGGTTCTTGAACATCGAATAAACAACGATTTCAGGGGACCACCCTCTCATCAGATTGGCACAAGCTTGTGGTTTTCCTTCTCAACTATGGTTTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTTGTTGTATGGCTTTTTGTGGTTCTAATTTTGGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTAACAGTTGAACAACTAAGGCCAACTGTTACAGATGTTAAGCAACTTCAAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTAAAGGAATTTTGAAGAACTTGGGTTTCCCAGACTCTAAGCTAATTACTTATCAATCACCAGAAGAATGTCATGAGCTTTTCCTAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAATTCCATATGTTAAGCACTTCCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAGCCGGTGGTTTTGGCTATGCTTTTCCAAAAGGTTCACCACTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAATGCATGGTTCAAGGAAGCTATTTGTCTAGATTCTAGTACAGAAATTTCCTCTAATAACAATCTTGGACTTGAAAGCTTTTGGGGTCTATTTCTCATTGCATGGATTGCTTCCCTAGTAGCACTCCTAATCTTTGTGGTAACATTCCTATATCAGCACAAACATATTTGGTTAAACAATGATCAAAATACTTCAATATGGCGACGAGTTTGCATCTTGGTTAGGATATTTGATCAAAGAGACTCGAACTCTCACACATTCAAAAAAAGTGAAAACAAAATTAAAAGCAGTAATAGTCCTCATGATGATGATGATGATATAGGTGCAGTTGAGGCATCTCCAGGTACACATTGTCCTCCTAGTCCATCTAGTCAAACTGAATCAAATGTTTCGTTTTATGGCGATTTTAGTTCAAACACAGAAATGGATCCTGTGAACAACTGTGAAATTAACTCCCAAGCAACAGCCAACATGACCTCATCTACATTTGTAACATCCAGCTCATAA 2886 0.3666 MVKMDNPSIMIFMVITCWFVNILGGMAQTRNNESSINAVKVGVVLDVSDGTFGKIGLSCINMALSDFYDSHSHHKTRIQIVVRDSHKDVVTAAAHAWDLIKNEEVQAIMGPRTTMEANFVIQLGNKAHVPIVTFSATSPSLASLQSPYYFQISQTDSAQVKAITSIILAFGWKQVVPIYIDNSFGEGLIPYLTNVLQQAYIQVPYLSAISLSATDDAITLELYKIMTTISTRVFIVHMSPNLGSKLFTLAKKIGMMSEGYVWIVTDSMTNLFNSLDFNVRESMEGVLGVRTYIPKTNKLDDFRVRWKRKFISDNPTLVDINLNIFGIWAYDATIALAMAIEKVGIGNTKVGYNESNTSSNMPNFEKLGITQNGEKLSEALSNTSFNGLSGDFNVVDGKLQASIFEIFNVIGDGGKRVGFWTPNKGLARNLETKSLMSNHNIYSSSKDDLGSIIWPGDMNSIPKGWEIPTIGKKLRIGVPVKSGDNYTEFLKVTYDNSANKTDTTGFCIDVFKAVVDVLPYDLPYELIPYANHEGQMAGTYDDLISQLYYGKYDAIVGDVTIIANRSEYVDFTMPYTESGVTMLVHLYSLDFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWLFVVLILVQSYTASLTSLLTVEQLRPTVTDVKQLQKNKMNVGYLKGSFVKGILKNLGFPDSKLITYQSPEECHELFLKGSVNGGIDAAFDEIPYVKHFLGTYSCSKYVMVEPRFKAGGFGYAFPKGSPLVADISRAILNVTQGDKMKTIENAWFKEAICLDSSTEISSNNNLGLESFWGLFLIAWIASLVALLIFVVTFLYQHKHIWLNNDQNTSIWRRVCILVRIFDQRDSNSHTFKKSENKIKSSNSPHDDDDDIGAVEASPGTHCPPSPSSQTESNVSFYGDFSSNTEMDPVNNCEINSQATANMTSSTFVTSSS 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05294 961 Gene3D - 165 343 - -
Trre6g05294 961 Gene3D - 353 473 - -
Trre6g05294 961 Gene3D - 474 583 - -
Trre6g05294 961 Pfam Receptor family ligand binding region 59 411 IPR001828 -
Trre6g05294 961 MobiDBLite consensus disorder prediction 910 931 - -
Trre6g05294 961 MobiDBLite consensus disorder prediction 881 931 - -
Trre6g05294 961 SUPERFAMILY Periplasmic binding protein-like II 451 799 - -
Trre6g05294 961 CDD PBP1_GABAb_receptor_plant 40 430 IPR044440 -
Trre6g05294 961 FunFam Glutamate receptor 369 472 - -
Trre6g05294 961 FunFam Glutamate receptor 155 311 - -
Trre6g05294 961 CDD GluR_Plant 472 797 - -
Trre6g05294 961 Pfam Bacterial extracellular solute-binding proteins, family 3 500 798 IPR001638 -
Trre6g05294 961 FunFam Glutamate receptor 473 589 - -
Trre6g05294 961 Gene3D - 36 164 - -
Trre6g05294 961 FunFam Glutamate receptor 569 697 - -
Trre6g05294 961 SUPERFAMILY Periplasmic binding protein-like I 38 456 IPR028082 -
Trre6g05294 961 MobiDBLite consensus disorder prediction 881 903 - -
Trre6g05294 961 FunFam Glutamate receptor 2.7 704 804 - -
Trre6g05294 961 Pfam Ligand-gated ion channel 799 830 IPR001320 GO:0015276|GO:0016020
Trre6g05294 961 SMART GluR_14 475 799 IPR001320 GO:0015276|GO:0016020
Trre6g05294 961 PIRSF IGluLR_plant 7 590 IPR017103 -
Trre6g05294 961 PIRSF IGluLR_plant 586 935 IPR017103 -
Trre6g05294 961 Gene3D - 710 804 - -
Trre6g05294 961 Gene3D - 584 697 - -
Trre6g05294 961 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 881 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05294 Trre-Chr6 54800982 54806072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05294 3 920 Ion Channels AT2G29120 48.312 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05294 K05387 - tcc:18587654 1068.14