Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05284 ATGGATAATCAAGTCACCACTCATCAAATTAAAACTTCATCATCATCATCTTCATCTTCAACAATAAATGGTAATAATAATGATGATGATAACAAAAACAAGAAGATGTACAAAGGAGTAAGATTGAGAAAGTGGGGAAAATGGGTGTCTGAAATAAGACTACCAAATAGTCGTGAAAGAATATGGTTAGGATCATATGATTCAGCTGAAAAAGCAGCTAGAGCATTTGATGCTGCACTTTATTGTCTCCGTGGTCCTAATGCTACTTTCAATTTCCCTGATACACCTTTCAATTTGGATAATATCAATGTTGTTAGTAACAACAATTCTCTTACTCCACAAGAGATTAGAGAAGTTGCTGCTAATTTTGCCAACAAAAATCAACCAATTATTATTGATAATAATAGTAATAGTATTAATATTAATAATAATGGTAATGATAATGGTAATGGTAATGTTGATCAATCCAACATTGTGAAGGAAATTAGTGGCTCTTCATCTTCTAATATGTATGACAATGGGAACATGATTGATTGGACATTTTTGAACATGTTGGATGGTTCAAGTGATGTTGGGACTGAAAATTATGGTGGTTTCTATTCCGACTTAGAAAAGATGCATTCCGGCGAGTTATTGTATTCCATTCCACCACCACTTTTTGAGGATTATAATCATCAGAACGAAATAGTTGATGATGATAATGACGATCCTTTTTCTCATCAAACATTTCTCTGGAGCTGGAATTTTTAA 750 0.328 MDNQVTTHQIKTSSSSSSSSTINGNNNDDDNKNKKMYKGVRLRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALYCLRGPNATFNFPDTPFNLDNINVVSNNNSLTPQEIREVAANFANKNQPIIIDNNSNSININNNGNDNGNGNVDQSNIVKEISGSSSSNMYDNGNMIDWTFLNMLDGSSDVGTENYGGFYSDLEKMHSGELLYSIPPPLFEDYNHQNEIVDDDNDDPFSHQTFLWSWNF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05284 249 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Trre6g05284 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 164 - -
Trre6g05284 249 MobiDBLite consensus disorder prediction 1 27 - -
Trre6g05284 249 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Trre6g05284 249 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Trre6g05284 249 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Trre6g05284 249 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05284 Trre-Chr6 54739233 54739982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05284 37 245 AP2-EREBP Transcription Factor Family AT1G19210 43.662 5.43e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g05284 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05284 - - mtr:11432431 288.115