Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05281 ATGGCGGATGTGATGGTAATGAAAGAGATTGAAGACAAAGCCTCGCTTCTTGGAATCGATCTATCCACCATTGATCTTGATTCCATTCAACTCCCACCGGGTTATGACTGTGGAATCATCAGTGATGATGAAGATGTTCTTCAAGAGGAAAATTCTGGTTCGTTTGACACTGGTTTTGGGAACATTATAGTAGTAGACAATCTTCCCGTTGTTCCGAAAGAAAAGTTTGAGAAACTTGAAGGCGTTGTTCGTAAAATTTACGGCCAGATTGGTGTTATCAAGGATGATGGTCTTTGGATGCCCGTTGATCCTGCCACTGGAAAGTCTTTAGGTTACTGCTTTATTGAATACAATACTCCTCAGGAAGCTGAGATTGCTAGAGAGAAGACTCATGGATACAAATTGGATCGTGCCCACGTATTTGCTGTGAGTATGTTTGATGATTTTGACCGGTTCATGAATGTGCCAGATGAGTGGGCTCCTCCTCCACACAAGGAATATACTCCAGGGGAAAATCTGCAACAATGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCGTGCTGCTAATGATCGTACTGGTAATGATACTGAGGTTTTTTGGAATGATGCTAGACATTTAAAGCCTGATCCTGTTTACAAACGTGCATACTGGACAGAGAGTTTTGTACAATGGTCACCTTTGGGCACATATTTGGCAACAGTTCACCGGCAGGGTGCAGCAGTCTGGGGAGGTGCTACAACCTTCAATCGTCTCATGCGATACGCTCATCCTCAGGTAAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTGACTTATAGTAGCCATGAACCAAGCAACCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGTACCGTGGGTGTCATGGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGCGGAAGAGACGACAAGTACTTTGCAAGGATGGGGAAAAATGTTCTTTCTGTATATGAGACAGAAAATTTTTCTCTTGTTGACAAAAAATCCATAAAAGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTGTTTGTTCCCGAGTCAGGAGGTGGTAACCAGCCAGCTAGGGTTAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTAGATCGATATACCAAAACAAAGAAAAGCACTTACACAGGCTTTGAGCTTTTCCGTATAAAGGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCGTTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCACGGTGATAACCCAAAGCCTGATATTAGTATCTACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTAAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTATTTGCAGGGTTGAAAGGTATGAACGGACAGTTGGAATTTTACAATGTTGATGACCTCGAAACCATGACTAATGCCGAACATTTTTGTGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCGACTGCAGTGACTTCATTGGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCCATGGCAAACATCTGTATCGGATATTGAAGGATAACTTCTATCAGTTCTTATGGAGACCAAGACCACCATCTTTCTTGACTGCTGAGAAAGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGATCAAGATGTTTCATTGCTGCTGAGTGAGCAGGAGCAAGAGAAGCGCAGGATCGTGAAAGAAGAATGGAACAAATGGGTCAATCAATGGAAGCAGTTGCATGAAGAAGAGAAGGCAAAGAGGCAAGAGCTGAGGGACGGCGAAGCTAGTGACGAGGAAGAAGAATATGAAGCAAAGGACATTGAAGTCGAGGAAGTAGTCAATGTTTCCAAAGAGATCCTTCACTCTGAATATGGTCAAGAGTGA 2181 0.4237 MADVMVMKEIEDKASLLGIDLSTIDLDSIQLPPGYDCGIISDDEDVLQEENSGSFDTGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYGQIGVIKDDGLWMPVDPATGKSLGYCFIEYNTPQEAEIAREKTHGYKLDRAHVFAVSMFDDFDRFMNVPDEWAPPPHKEYTPGENLQQWLTDAKARDQFVIRAANDRTGNDTEVFWNDARHLKPDPVYKRAYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTVGVMGVSWPVFKWSGGRDDKYFARMGKNVLSVYETENFSLVDKKSIKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIVAFAWEPKGHRFAVIHGDNPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVFAGLKGMNGQLEFYNVDDLETMTNAEHFCATDVEWDPTGRYVATAVTSLVHEMENGFNIWSFHGKHLYRILKDNFYQFLWRPRPPSFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEQEKRRIVKEEWNKWVNQWKQLHEEEKAKRQELRDGEASDEEEEYEAKDIEVEEVVNVSKEILHSEYGQE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05281 726 SMART rrm1_1 62 144 IPR000504 GO:0003723
Trre6g05281 726 Pfam Eukaryotic translation initiation factor eIF2A 412 613 IPR013979 -
Trre6g05281 726 Coils Coil 625 645 - -
Trre6g05281 726 Gene3D - 56 155 IPR012677 -
Trre6g05281 726 FunFam Eukaryotic translation initiation factor 3 subunit B 182 388 - -
Trre6g05281 726 SUPERFAMILY RNA-binding domain, RBD 60 138 IPR035979 GO:0003676
Trre6g05281 726 PIRSF Transl_init_eIF3b 6 721 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre6g05281 726 SUPERFAMILY DPP6 N-terminal domain-like 224 605 - -
Trre6g05281 726 MobiDBLite consensus disorder prediction 682 703 - -
Trre6g05281 726 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 148 IPR000504 GO:0003723
Trre6g05281 726 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 136 IPR000504 GO:0003723
Trre6g05281 726 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 720 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre6g05281 726 FunFam Eukaryotic translation initiation factor 3 subunit B 56 155 - -
Trre6g05281 726 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 27 717 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre6g05281 726 FunFam Eukaryotic translation initiation factor 3 subunit B 417 633 - -
Trre6g05281 726 Gene3D - 195 389 IPR015943 GO:0005515
Trre6g05281 726 CDD RRM_eIF3B 60 144 IPR034363 -
Trre6g05281 726 Gene3D - 402 640 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05281 Trre-Chr6 54688603 54692418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05281 5 720 Eukaryotic Initiation Factors Gene Family AT5G27640 75.453 0.0 1147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05281 K03253 - gmx:100817394 1311.59