Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05280 ATGGGTGGTGAGGGTAGAGTTGAAGTTGTGAGTGGCAAAGGGTGTTCCAGGTTGTTTTCATCTTCATTTACTTCAATCAGAGGTCTTCAGCCATTGGAGCAAATGTCTTTTGTTTCATCTTCTCCCCAAGTTTCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGTCCCAATCTGCATCCTCAATGTACTCATTTGGTGTACAACTTTGGTGGACGCAAATTCGAGCATGCGTTGAAACATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTCGATAGTGTCAGGAAAAATGTAAGGTTGACTGAATCACTTTATAGTTTGAAGAGTCATGGGGATAACAGTATGCCCTCGGATGATTTTAGACTGCTTCCCGGTTATACAAATGCTGGTAATTGTCTTCCTGCAAAAATCCATGAGATCAAGCATACTCATCATGCTGAAGAATTTCGAAGATTCTCTGGGAGAGAGTCTAACAGAAGTCTGGCAACTCTGTCTGGTTCCTCCATCTATGTTGATCCAAGCATTTCATCCGAATTGCAGAACAAGGTTGTTGAGGCTGCCTCAAGAGAAGGTGCTAGTTTTGTAGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGCACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACGCCACTGTGGATTCTCAAAACAGCTAAGGAGAAACAACTACAAAGGCTTGTTAACATGTCTGTTGATTTGGCAAGACAACTCGGCTTGATGCTTGAAGATGCTCATAATGGCATTTCAGGGAAGGACGCAGTAAAGCAAAAAGTCCTTGACGAAGTTGGTTACAAAGAAAGGCAACAAATAGTAAATTCAGCAAAAACTGGTGTCAGAAGTCGCCGTGGTCGTAGAATGCAGACATGTCAGACTCCAATCCGCCCGATAACACCTAACAACCTTCTGGACTCTATCTGCTGGTCAATATCAGAAGCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGCGCTGAAGATCCTAATGAAAATCACAATTCAATATTTTTTGATGCAAAAGGGGATGGAAAGGATGCAGACGCTTCATTTTCGAACTCGACACGTCCTCTATCAGAAAGTGAGAAATCTGAGTTGATATTTAAAAACCATTTTCTTACCATACTCTTCCCAATCGACCGGTTTTCCGAGATTGGCCCTTCCACAAGAACGTTTTTTAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGCCAAGCCATGAAATAGAAGTGGCAATTCATACAGATTCAAGACACGCGGACAGACTCCGATCAGTGTACTCGAGTAAGGAAACTGCGGAGCATGGGTATGTGATGTTCAAACGAATTGAATTTTTGGGTAGTCGTACTAGTTTTGAAATGTTGAAACGTGTAAGTGGGGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCATAA 1587 0.4165 MGGEGRVEVVSGKGCSRLFSSSFTSIRGLQPLEQMSFVSSSPQVSSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVYNFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLTESLYSLKSHGDNSMPSDDFRLLPGYTNAGNCLPAKIHEIKHTHHAEEFRRFSGRESNRSLATLSGSSIYVDPSISSELQNKVVEAASREGASFVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQLQRLVNMSVDLARQLGLMLEDAHNGISGKDAVKQKVLDEVGYKERQQIVNSAKTGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPNENHNSIFFDAKGDGKDADASFSNSTRPLSESEKSELIFKNHFLTILFPIDRFSEIGPSTRTFFSHNGFTCLQVLDHIHAFYQENMPSHEIEVAIHTDSRHADRLRSVYSSKETAEHGYVMFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05280 528 Pfam Family of unknown function (DUF6699) 422 512 IPR046522 -
Trre6g05280 528 SUPERFAMILY BRCT domain 47 137 IPR036420 -
Trre6g05280 528 Pfam twin BRCT domain 53 118 IPR001357 -
Trre6g05280 528 CDD BRCT_TopBP1_rpt2_like 49 126 - -
Trre6g05280 528 Gene3D BRCT domain 48 138 IPR036420 -
Trre6g05280 528 ProSiteProfiles BRCT domain profile. 188 276 IPR001357 -
Trre6g05280 528 SMART BRCT_7 190 266 IPR001357 -
Trre6g05280 528 SMART BRCT_7 47 126 IPR001357 -
Trre6g05280 528 ProSiteProfiles BRCT domain profile. 45 136 IPR001357 -
Trre6g05280 528 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05280 Trre-Chr6 54673485 54676807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05280 49 136 Core DNA Replication Machinery Family AT1G77320 37.079 2.61e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05280 - - gmx:100815253 855.129