Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05275 ATGGATTCATCAAACGATAATCATGACCAAGACCAACAACGTAAATGTCTCAAAAGAACCTTTGAACACTTGTACACAAAACCCATTGTCGATGATTCTCCTTCTCAAGAATCCCTCATTATCAACTTGGTCCCTAGAAGGTATCAATTAGAGGCTTTTGAAGTTGCAAAGAAAAGGAACACAATTGCAATTATGGATACAGGTTCTGGTAAAACTTTGATAGCTATAATGCTTATCAAAGAAATTGGTCAATCAATTAGGTCAAGTGGAGTCAAAAAGTTGATTATTTTCTTAGCTCCAACAGTTCATCTTGTGAATCAGCAATACAAGAATATAAAACTTAATACAGATTTTCAAGTTGAGGAATACTATGGGATGAAAGGAGTTGATACATGGAATTTAAAGTGCTGGCAGAAGGAAATTAGCGACAATGATGTGATGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATTGAAATGATACGCTTGATGGTTCTTGATGAGTGTCACTGGGCATCAGGCAACCATCCCTATGCAAAACTAATGGCGGAATTTTATCACCAAGCTAATGAGAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTCGGTAAAAGAGGTGTTTCTTCTACTTTGGTTTGTAAGGATCAGATATCAGACCTCGAAAACATCTTGGATTCTAAGAGTTATGTTGTTGAAGATCGAACGGAGATGGATGTATATATCCCATCTGCAAAAGAGAGTTGTAGATATTATGACCAAGCAAGATTTCCCGCTTTGAGTTTGAAGCCAAAAATCGAAGCCTTGTGGTCAAAGTGTGATGTGTTGTTAGAATTTCAAAGTAATTTCAAGGATATGGAAAATAAATTTAAGATACTGTATCAGCGGATGTCCAATGAACTGGCCAAAATATTGTATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCTGCTAAAATCTGTCATCAGAAATTCTCTAAAATTTGCGGAGAGTGTGAAATTTACAGAAAAGCCAATCTTCAATGTGTAACTGTCATCGAAGAAGTGATCCATTTAATTGAAGAATCCCTTCATCTTGCCAATGAAATTATTTCGGATGTTGAATTTGATTGTTCAAAGGCAGTAGACATGGGATACATATCACCAAAATTACTTGAACTTATTAAACTCTTTGAAACATTTGGAGAACCTAGTCAGTTAATGTGCCTCATTTTCGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTTAAAAAAGTTTCCCAGGTATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTGGCTCGTAATAAGCAGAAAGAGACACTGGATTCTTTCCGAGCCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGCATTCACGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAACTCTCAATTTATTTTGATGTTGGAGAGAGGAAATTTGAAGCATAGAAATATGCTCTTTGACATAATCAGGAGTGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACAATGGATGTAATTTAAGGACATTTACAGTTAGGAAAACAGAAGCATACCATGTGGATTCTACTGGAGCATCAGTCAATTTAGATTCTAGTGTTACTCTTATAAATCATTATTGCGAAAAGCTCCCACGAGATAAGTACTCCTCTGGAAAGCCAAATTTTGAGTTTGTGCCTGTGGAGGGAGGAGGGTACGAGTGTAAATTAACATTACCACCTAATGCAGCTTTCCATACAATAGTTGGTCCTTCGGGAAAAGATGTTCGGCTAGCAAAGAGTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCAACTTGAATGATCATCTTGTTCCATCCATTGAAGATCCTCCAGAAGTAGACAATGTTGTAAAAATAAAGGAATCGAGTTCAGCTGCAGGTGCAGGAACCACGAAAAGAAAGGAGTTACACGGCACAACCAGCATTAAGGCATTATGTGGTTCATGGGGAGACAAACTTGATGGAGCCAAATTTCATGCTTATAAATGTGAATTTAAGTGCAATATTGTTAGTGAAACTTATTCTGGATTTGTTCTTCTGCTCGAGTCAAAGCTTGATGATGATGTGGGAAATTTGGAATTAGATCTTTATTTAATCTCAAAGTATGTGAAGACTTCTGTCATTTCATGCGGGCAAGTTGATTTGGATGCTGACCAGGTGAAGAAAGCAAAAAGCTTTCATGAACTTTTTTTCAATGGTTTGTTTGGGAGATTGATTCGCAAGTCCAAATCTGGCAAGGGGGAAAGGGAGTTTTTCCTGCAGAAAGACACAGAACTATTGTGGAGTCCAAAATACTCGTATTTGCTTCTACCACTTAAGAAGTCAAATGACATATGTATGGGATCTTTGCAAATACATTGGCCTGCAATCAGTTCTTGTGCTTCTGCTATTGAATTTGTAAGGCAGAAATTTTCATTGGTCGCAGAAGATTCTGATGATAACAGCAAAATCATATCATTGCCTTGTGATACCACCAATTCATCGGATATGGAACATGAAAGCACAAACAAATTTCACTTTGCCAATTGTGCTATTGACGTTAGTAATGTGAAAGATACGGTAGCTTTGGCCATTCATACTGGGAAAGTATATTGTATCATTGATGTAGTTGAGAACTCATCCGCTGAAAGTCCTTTTGACGGAAACAGTGACAAGCCGGGAGCGGAATGCAGGATGACGTTCTCGCAGTATTTCCAGAAAAGGTATGGAATCACATTAAGACATCCGGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTTTGAACATTCATGACGAAGATGCTGAGGACAAATCATCACTAATTGGCCCGGTAACCAAAAAACCGCCTGTACATGTTCACATTCCACCTGAGCTTCTTTGCCTTCTTGATATTAAAAGAGATGTGTACAAGTCAATGTACTTACTACCATCTCTTATGTACCGTATTGAATCTCTCATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGCCACACTGACATTTTCAAGATACCAAGCTCTCTGGTTCTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCGATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCGGTGAGCTGTCATCTCTTTCTTAAATATCCCAAGAAACACGAAGGACACTTATCTGCCAAAAGACAATACGCTGTTCGTAATTCTACCCTACATAAACTGGGAACGGATCGCAATTTACAGGGATATATTCGAGATTCTGCATTTGATCCGCGCCGTTGGGTTGCTCCTGGACAAGACTGTATACACCTTGTTCCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATAAGTTCCATACTGAAGATCCAAAAAAAGTGGTTGGGAAGCTGTGTGATAGGGGACACCGCTGGATGTGCTCGAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGGGCATACTATGTGGGTGGTGGATTGATTGCCGCACTTCACATGATGAAATGGCTTGGGATTGATTCGGGACTTGAACCATCCATGGTCGATGAAGCCATTGCTGCTGCATCTCTTCACACATATACGCCAAAATTAAATGAGATTGCAATCCTTGAGACTAAAATAGGATACGAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTGTCCAAGTCAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACCTTCTCATCACATGGCATCTATATCAGACTCACACGGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGCTGCTGTTAGACGAAACCTTCATCCGCACCTTCTGCATAGCTCAGGATTATTACAAAGCCAGATATTGGAATATGCAAAGGTCATTTCAGAATCAGAAGACAACAGCATATCAATCCCGGGGATTAAGGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATCGCTGGGGCTATACTAATTGATACGAAGCTTGATCTTGATGTAGTGTGGAAGCTTTTCAATCCGTTGTTATCTCCCATTGTTACACCTGATAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAATTATGCGACTCTCTCGGATATTTTGTAAAAGTGAAAGTAAGTCGTGAGAAGAAGGGAACCATGGAGCATGTTGTGCTTAGTGTACAGTTGCCAGATGCTAAATTGGTTCGAGATGGAATGGGACTAACTAAAAAATCTGCGAAAGGAGAGGCCGCTTTTCGTTTGTTGAAGGATCTTGAGAAAAGGGGAATTTCATACAAGGGAAAAAGGGTAATGGATTTCAGTATTCCGGCTTGTCAAACTGAAGAACAATCGCCAAAGCCCGTAGCACACAAAAAGCCCAAATTGGAAAAACGTAACCCTATTGCAAATCCATCCACTAGTGATCTCAAGGACATTTCCAGCGGATCTTCTGATATTAATCGCACCATTCCAGTTATTCTATCGACTAATATGAAAAGGAAGGGAGGACCCCGGACTGAACTGTATGCAGTTTGCAAGAAAATGCAGTGGCCATTGCCTTCATTTGATTCCAAAGAATATAAAGATAGATCTCTATTTGAATCGTGTGAAGGCTTGGAAGGAAGCAAAGGACTGAACTGTTTTGTGTCGAAAATAACTTTGTGCATACCAAGTCATGGTAATTTAGAATGTGAAGGAGAAGCTAGAGCTGATAAGAAGAGCTCATTTGACTCTGCTGCAGTTCAAGTGCTTTATGAGCTACAACGCCTTGGAAAGATTACTATTGACGATGTTTCCCAATAA 5010 0.3972 MDSSNDNHDQDQQRKCLKRTFEHLYTKPIVDDSPSQESLIINLVPRRYQLEAFEVAKKRNTIAIMDTGSGKTLIAIMLIKEIGQSIRSSGVKKLIIFLAPTVHLVNQQYKNIKLNTDFQVEEYYGMKGVDTWNLKCWQKEISDNDVMVMTPQILLDALRKAFLSIEMIRLMVLDECHWASGNHPYAKLMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCKDQISDLENILDSKSYVVEDRTEMDVYIPSAKESCRYYDQARFPALSLKPKIEALWSKCDVLLEFQSNFKDMENKFKILYQRMSNELAKILYCLEDLGLLCAYEAAKICHQKFSKICGECEIYRKANLQCVTVIEEVIHLIEESLHLANEIISDVEFDCSKAVDMGYISPKLLELIKLFETFGEPSQLMCLIFVERIITAKVIERFVKKVSQVSHLTVAYVTGSNTSADALARNKQKETLDSFRAGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKHRNMLFDIIRSERSMNDAAVSKDNGCNLRTFTVRKTEAYHVDSTGASVNLDSSVTLINHYCEKLPRDKYSSGKPNFEFVPVEGGGYECKLTLPPNAAFHTIVGPSGKDVRLAKSLVCLEACKKLHQMGNLNDHLVPSIEDPPEVDNVVKIKESSSAAGAGTTKRKELHGTTSIKALCGSWGDKLDGAKFHAYKCEFKCNIVSETYSGFVLLLESKLDDDVGNLELDLYLISKYVKTSVISCGQVDLDADQVKKAKSFHELFFNGLFGRLIRKSKSGKGEREFFLQKDTELLWSPKYSYLLLPLKKSNDICMGSLQIHWPAISSCASAIEFVRQKFSLVAEDSDDNSKIISLPCDTTNSSDMEHESTNKFHFANCAIDVSNVKDTVALAIHTGKVYCIIDVVENSSAESPFDGNSDKPGAECRMTFSQYFQKRYGITLRHPEQPLLRLKQGHNAHNLFLNIHDEDAEDKSSLIGPVTKKPPVHVHIPPELLCLLDIKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDIFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQYAVRNSTLHKLGTDRNLQGYIRDSAFDPRRWVAPGQDCIHLVPCDCGLETLEVPLDKFHTEDPKKVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIAALHMMKWLGIDSGLEPSMVDEAIAAASLHTYTPKLNEIAILETKIGYEFSVKGLLVEATTHLSKSEHGTGCCYERLEFLGDSVLDLLITWHLYQTHTEIDPGELTDLRSASVNNDNFAQAAVRRNLHPHLLHSSGLLQSQILEYAKVISESEDNSISIPGIKAPKALGDLVESIAGAILIDTKLDLDVVWKLFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVSREKKGTMEHVVLSVQLPDAKLVRDGMGLTKKSAKGEAAFRLLKDLEKRGISYKGKRVMDFSIPACQTEEQSPKPVAHKKPKLEKRNPIANPSTSDLKDISSGSSDINRTIPVILSTNMKRKGGPRTELYAVCKKMQWPLPSFDSKEYKDRSLFESCEGLEGSKGLNCFVSKITLCIPSHGNLECEGEARADKKSSFDSAAVQVLYELQRLGKITIDDVSQ 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05275 1669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 551 IPR001650 -
Trre6g05275 1669 Pfam Helicase conserved C-terminal domain 408 513 IPR001650 -
Trre6g05275 1669 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 670 IPR005034 GO:0016891
Trre6g05275 1669 Gene3D - 1579 1658 - -
Trre6g05275 1669 SUPERFAMILY RNase III domain-like 1059 1230 IPR036389 GO:0004525|GO:0006396
Trre6g05275 1669 PANTHER DICER-RELATED 59 1500 - -
Trre6g05275 1669 FunFam Endoribonuclease dicer-like protein 40 279 - -
Trre6g05275 1669 Gene3D - 383 533 IPR027417 -
Trre6g05275 1669 CDD RIBOc 1064 1227 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 Gene3D paz domain 883 1021 - -
Trre6g05275 1669 FunFam Endoribonuclease dicer-like 1 574 671 - -
Trre6g05275 1669 ProSiteProfiles Ribonuclease III family domain profile. 1257 1402 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 Pfam DEAD/DEAH box helicase 47 208 IPR011545 GO:0003676|GO:0005524
Trre6g05275 1669 ProSiteProfiles Ribonuclease III family domain profile. 1045 1216 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 Gene3D Dicer dimerisation domain 574 671 IPR038248 -
Trre6g05275 1669 ProSiteProfiles PAZ domain profile. 906 1020 IPR003100 GO:0005515
Trre6g05275 1669 SMART PAZ_2_a_3 881 1044 IPR003100 GO:0005515
Trre6g05275 1669 MobiDBLite consensus disorder prediction 1536 1550 - -
Trre6g05275 1669 FunFam Endoribonuclease dicer-like 1 1251 1423 - -
Trre6g05275 1669 CDD DEXHc_dicer 45 241 - -
Trre6g05275 1669 SMART helicmild6 418 513 IPR001650 -
Trre6g05275 1669 Pfam Ribonuclease III domain 1082 1215 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 Pfam Ribonuclease III domain 1293 1401 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 Gene3D Ribonuclease III domain 1051 1227 IPR036389 GO:0004525|GO:0006396
Trre6g05275 1669 ProSitePatterns Ribonuclease III family signature. 1293 1301 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1428 1496 IPR014720 -
Trre6g05275 1669 FunFam Endoribonuclease dicer-like 1 383 546 - -
Trre6g05275 1669 SUPERFAMILY RNase III domain-like 1257 1422 IPR036389 GO:0004525|GO:0006396
Trre6g05275 1669 MobiDBLite consensus disorder prediction 1517 1550 - -
Trre6g05275 1669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 227 IPR014001 -
Trre6g05275 1669 SUPERFAMILY PAZ domain 907 1019 IPR036085 GO:0005515
Trre6g05275 1669 SMART ultradead3 41 240 IPR014001 -
Trre6g05275 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 519 IPR027417 -
Trre6g05275 1669 Pfam Dicer dimerisation domain 579 664 - -
Trre6g05275 1669 Gene3D Ribonuclease III domain 1253 1424 IPR036389 GO:0004525|GO:0006396
Trre6g05275 1669 SMART riboneu5 1064 1236 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 SMART riboneu5 1272 1425 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 CDD RIBOc 1273 1423 IPR000999 GO:0004525|GO:0006396
Trre6g05275 1669 CDD SF2_C_dicer 388 520 - -
Trre6g05275 1669 Gene3D - 40 276 IPR027417 -
Trre6g05275 1669 FunFam Dicer-like 104 1040 1228 - -
Trre6g05275 1669 Pfam PAZ domain 887 1041 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05275 Trre-Chr6 54655798 54666822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05275 410 511 Eukaryotic Initiation Factors Gene Family AT1G72730 36.792 1.10e-06 51.2