Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05267 ATGAGTCTCCGCAAGGGCTCCAAGGTTTGGGTCCCTGATAGGGATTTCGCTTGGCTTCCTGCTGAAGTTCTCGAATCTTCTGAAAAGCAAGTTCGCGTTCAAACCGATTCCGTCAATAAGATTGTTGTTGTTACTCCGGAGAAAATATTTCCTAGAGATGCCGATGAAGATGAGCACGGTGGAGTTGAAGATATGACGAGATTGGTTTATTTGAATGAACCAGGGGTGTTGTACAATATTCGGAGAAGATATGCGCTTAATGATATTTATACATATACAGGGAGCATTTTAATAGCTGTTAATCCATTCACAAAGCTTCCTCATTTGTACAATAACCATATGATGGAGCAGTATAAGGGAGCACCATTTGGAGAGCTAAGTCCACATGTATTCGCCGTTGCCGATGCATCGTATAGAGCAATGATGAATGAAGGTCGAAGCCAATCTATCTTGGTCAGTGGTGAAAGTGGTGCCGGGAAAACCGAGACAACAAAATTGATTATGCAGTATCTTACCTTTGTTGGTGGGCGTGTTGTTTCTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACTTCCAGAAATGACAATTCAAGCCGTTTTGGGAAGTTCGTTGAAATTCAGTTTGACTCAAGTGGTAAAATATCTGGTGCTGCAATTAGAACTTACTTATTGGAAAGGTCACGAGTAGTGCAGACCACGGATCCTGAAAGAAATTATCACTGCTTTTACCAGTTGTGTGCATCTGAAAGGGATGTAGAAAAGTACAAGTTAGGACATCCAAGTCACTTCCACTATTTGAATCAAAGTAAAGTTTATGAATTAGATGGGGTAAGCAGTGCAGAAGAATACATAAAGACGAGAAGAGCAATGAATATTGTTGGCATAAGTCACGAGGATCAGGAAGCCATATTTCGCACCTTAGCTGCAATTTTACATCTGGGAAATGTTGAATTTTCTCCTGGGAAAGAGCATGACTCGTCAATAATAAAGGACGAGAAATCAACATTTCATTTGCAGATGGCTGCTAATCTTTTCAAGTGTGATCTGAACCTACTACGAACAACATTATGTACTCGTACAATACAAACCCGCGAAGGAAATATTGTCAAAGCTCTTGATTGCAATGAGGCTGTTGCTGGCAGGGATGTTTTGGCGAAAACCGTCTATGCTCGTTTGTTTGATTGGCTTGTTGATAAGATCAATAAAACGGTTGGGCAAGATATCAATTCCAGGATGCAAATTGGAATATTGGATATATATGGCTTTGAGTCTTTTAAGGATAACAGTTTTGAGCAATTCTGCATCAATTTTGCAAACGAAAAGCTTCAACAACATTTTAATGAGCATGTATTCAAGATGGAGCAAGAGGAGTATACAAAAGAAGAAATCGAGTGGAGTTACATTGAATTTATAGACAACCAAGATGTTTTAGATTTGATTGAAAAGAAGCCCATTGGTATCATTGCCCTGTTAGATGAAGCATGCATGTTTCCAAAATCGACGCACCAAACATTCTCAACCAAGTTGTTTCAGCACTTCTTATCCCACACTAGGTTTGGAAAGGAGAAGTTTTCAGAAACAGATTTTACTGTTTCTCATTATGCTGGAAAGGTCACATACCATACAAACACATTTTTAGACAAAAATCGTGATTATGTAGTTCTAGAGCATTGTAATGTATTATCTTCTTCAAAATGCCCCTTTGTGAAGGGTCTTTTTCCTTCTTTACCAGAGGAATCTTCAAGGTCATCCTACAAGTTTTCATCCGTGGCTTCCAGATTTAAGCAACAACTTCAAGCACTTATGGAAACACTGAAGACAACAGAGCCTCATTACATTCGATGCGTCAAGCCAAATTCATCGAATCTACCGCAAAAGTTTGAGAATACAAGTGTCTTACATCAATTACGTTGCGGGGGTGTACTTGAGGCTGTTCGGATAAGTCTGGCAGGTTATCCAACTCGAAGGACTTACGCGGAGTTTGTAGATCGCTTTGGATTAATAGCTCCTGAATTTATGGATGGAAGTTATGATGATAGAGCTACAACTCAGAAAATATTGCAAAAGCTAAATCTTGAGAATTTTCAGCTTGGTAGGACTAAAGTGTTTCTCCGGGCTGGCCAAATTGGTGTTTTAGACTCTAGGCGGGCTGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGTGTCGACTGCGTACATTTATAGCACACCGGGATTTCGTCTCAATCCGAGCTGCTGCAGTTTCTCTTCAAGCATGCTGCAGGGGATGCCTAGCACGGAAGATATATGCTTCTAAACGGGAGACTGCAGCAGCTATCTCCATTCAGAAATATATTCGTATGTGTCTTATGAGGCGTGCTTACACGGCATTGTATTCTTCTGCTATCATCATACAATCAAATGTTCGTGGTTTCACAATTCGCCAAAGATTCTTGCATAGAAAAGAACACAAATCTGCAACTATTATACAGGCTTATTGGAAGATGTGCAAGGTTCGGTCTACTTTCAAAAAACATCGATTTTCAATTGTGGCAATACAATGCCTTTGGCGCTGTAAACAAGCAAAAAGACAGCTTCGCAGACTTAAACAAGAGGCTAGTGAAGCTGGTGCCTTGCGTTTAGCTAAGACTAACCTTGAGAAACAATTGGAAGAGCTCACATGGCGTTTGCATCTTGAAAAAAAAATAAGGATGTCTAATGAAGAGGCTAAGCAAGTTGAGATTTCCAAACTTCAGAAGATGTTGGAAGCTCAGAATTGTGAATTAGATGAAGCTAAATTGGCAACAATTAATGAGTTGAATAAGAATGCAATTTTGCAAAATCAGTTGCAGTTATCAGCTAAGGAAAAATCTGCTTTAGAAAGAGAGCTAGTTGCAATGAATGAAGTGCGGAAGGAAAATGCTCTTTTAAAGGGTTCTTTGGATGCATTGGAAAAGAAGAGCACGGCTTTGGAGCTTGAGCTTGTGAATGCTCAAAAAGACCATAGTGAAACCATTCAGAAAATGAAGGAGTTTGAACAGAAGAGTTCTCAACTAGCACAAAATTTGAAAAGTCTTGAAGAAAAGCTTTTGAGTTTGGAGAATGAAAATCACGTCCTTCGTCAGAAAGCCTTAAGTTTATCTCCGAAGAGTAATCATCCAGGTTTTGCAAAGTCATCATTAGAAAAAAACTCAAGTGCAATAGTCCCCCACACTGAGCAAAACCCAGCATTTGAATCACCCACACCCACAAAACTTATTTCCTCCTTTACACGTGGCTTGTCAGATTCTCGTCGGTCTAAATTAACAGCAGAAAAGCACCAGGATAACTATGAATTCCTCACTAGGTGTATCAAAGAGAATTTGGGGTTCAAAAATGGTAAACCTGTGGCAGCTAGTGTCATATACAAATGTCTTCTCCATTGGCATGCATTTGAATCTGAGCGCACCGCCATATTTGATTACATAATTGATAGAATTAATGATGCCATCAAAGTTACCGACAACGACACTGTCTTGCCATATTGGCTGTCCAATACCTCCGCACTTGTGTGCCTTTTACAGAGAAATGTTCATTCAAATGGTTTTTTAACTACCACTGGTCAACGTTATGCTGGATCATCTGGTTTGACCACCCGGATGGGGCATGGACTGAAGTCTTCATTGAAGTTAATTGGATATAATGATGGTATGCCACATGTGGATGCAAGATATCCAGCTATACTTTTTAAACAACAACTAACTGCTTGTGTAGAGAAGATTTTTGGCCTTATACGTGATAATTTGAAAAGGGAACTTTCTCCGCTTCTGTCATTATGTATTCAGGCACCCAAAGCAGGACGAGTGCAAAGTGGGAAATCATCTAGATCTCCTGGGGGACTTCCTCAACAATCACCTGGTGGCCAATGGGACAACATCATCAATTTTTTGAATTCACTCTTGAACCGATTATGTGCAAATCATATACCATCCTTCTTCATCCGCAAGCTAGTTACACAGGTCTTTTCCTTCATCAATATGACACTGTTCAACAGTCTTCTTTTGCGACGTGAATGTTGTACTTTCTCAAATGGTGAATATGTAAAGTCTGGTCTTGCTGAACTGGAGAAATGGATAGTTAATGCAAATGAAGAGTATGCAGGAACATCCTGGCATGAGCTGAATTATATAAGACAAGCTGTCGGGTTTCTGGTAATACATCAGAAGAGAAAGAAATCTTTGGAAGAAATTAGACAGGATCTTTGTCCGGCATTAACTGTGAGGCAAATCTATCGAATCAGTACTATGTACTGGGATGACAAGTATGGAACCCAAAGTGTGTCCAACGAGGTAGTCGGTGAAATGAGGGAAATTGTGAGCAAAGACAATCATAGTTTGTCCTCAAATTCATTCTTGATGGATGACGACATGAGTATTCCTTTTTCTGCTGAAGACATAGACATGGCGATCCCTGCTGTGGATGCTGATGATATTGAGCTCCCAGCATTCTTGTGTGAATACCCTTGTGCCCAGTTTCTTGTTTCACACGAGTAA 4551 0.3993 MSLRKGSKVWVPDRDFAWLPAEVLESSEKQVRVQTDSVNKIVVVTPEKIFPRDADEDEHGGVEDMTRLVYLNEPGVLYNIRRRYALNDIYTYTGSILIAVNPFTKLPHLYNNHMMEQYKGAPFGELSPHVFAVADASYRAMMNEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRVVSDDRTVEQQVLESNPLLEAFGNARTSRNDNSSRFGKFVEIQFDSSGKISGAAIRTYLLERSRVVQTTDPERNYHCFYQLCASERDVEKYKLGHPSHFHYLNQSKVYELDGVSSAEEYIKTRRAMNIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSIIKDEKSTFHLQMAANLFKCDLNLLRTTLCTRTIQTREGNIVKALDCNEAVAGRDVLAKTVYARLFDWLVDKINKTVGQDINSRMQIGILDIYGFESFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYTKEEIEWSYIEFIDNQDVLDLIEKKPIGIIALLDEACMFPKSTHQTFSTKLFQHFLSHTRFGKEKFSETDFTVSHYAGKVTYHTNTFLDKNRDYVVLEHCNVLSSSKCPFVKGLFPSLPEESSRSSYKFSSVASRFKQQLQALMETLKTTEPHYIRCVKPNSSNLPQKFENTSVLHQLRCGGVLEAVRISLAGYPTRRTYAEFVDRFGLIAPEFMDGSYDDRATTQKILQKLNLENFQLGRTKVFLRAGQIGVLDSRRAEVLDNAAKCIQCRLRTFIAHRDFVSIRAAAVSLQACCRGCLARKIYASKRETAAAISIQKYIRMCLMRRAYTALYSSAIIIQSNVRGFTIRQRFLHRKEHKSATIIQAYWKMCKVRSTFKKHRFSIVAIQCLWRCKQAKRQLRRLKQEASEAGALRLAKTNLEKQLEELTWRLHLEKKIRMSNEEAKQVEISKLQKMLEAQNCELDEAKLATINELNKNAILQNQLQLSAKEKSALERELVAMNEVRKENALLKGSLDALEKKSTALELELVNAQKDHSETIQKMKEFEQKSSQLAQNLKSLEEKLLSLENENHVLRQKALSLSPKSNHPGFAKSSLEKNSSAIVPHTEQNPAFESPTPTKLISSFTRGLSDSRRSKLTAEKHQDNYEFLTRCIKENLGFKNGKPVAASVIYKCLLHWHAFESERTAIFDYIIDRINDAIKVTDNDTVLPYWLSNTSALVCLLQRNVHSNGFLTTTGQRYAGSSGLTTRMGHGLKSSLKLIGYNDGMPHVDARYPAILFKQQLTACVEKIFGLIRDNLKRELSPLLSLCIQAPKAGRVQSGKSSRSPGGLPQQSPGGQWDNIINFLNSLLNRLCANHIPSFFIRKLVTQVFSFINMTLFNSLLLRRECCTFSNGEYVKSGLAELEKWIVNANEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVGEMREIVSKDNHSLSSNSFLMDDDMSIPFSAEDIDMAIPAVDADDIELPAFLCEYPCAQFLVSHE 1516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05267 1516 Coils Coil 865 885 - -
Trre6g05267 1516 ProSiteProfiles IQ motif profile. 781 807 IPR000048 GO:0005515
Trre6g05267 1516 Coils Coil 973 1049 - -
Trre6g05267 1516 ProSiteProfiles IQ motif profile. 756 785 IPR000048 GO:0005515
Trre6g05267 1516 PRINTS Myosin heavy chain signature 90 109 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 PRINTS Myosin heavy chain signature 426 454 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 PRINTS Myosin heavy chain signature 194 221 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 PRINTS Myosin heavy chain signature 479 507 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 PRINTS Myosin heavy chain signature 147 172 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 Pfam DIL domain 1336 1439 IPR002710 -
Trre6g05267 1516 Gene3D - 250 307 - -
Trre6g05267 1516 SMART MYSc_2a 54 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 ProSiteProfiles IQ motif profile. 804 833 IPR000048 GO:0005515
Trre6g05267 1516 Pfam Myosin head (motor domain) 62 718 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 CDD MYSc_Myo11 74 718 IPR036018 -
Trre6g05267 1516 Gene3D - 436 621 - -
Trre6g05267 1516 ProSiteProfiles Dilute domain profile. 1160 1460 IPR002710 -
Trre6g05267 1516 Gene3D Myosin VI head, motor domain, U50 subdomain 309 599 - -
Trre6g05267 1516 FunFam Myosin heavy chain 250 304 - -
Trre6g05267 1516 CDD MyosinXI_CBD 1111 1483 IPR037975 GO:0007015
Trre6g05267 1516 Coils Coil 921 941 - -
Trre6g05267 1516 Gene3D - 783 829 - -
Trre6g05267 1516 Gene3D - 830 880 - -
Trre6g05267 1516 Gene3D - 732 782 - -
Trre6g05267 1516 Gene3D - 664 731 - -
Trre6g05267 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 879 IPR027417 -
Trre6g05267 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 828 IPR027417 -
Trre6g05267 1516 SMART DIL_2 1335 1442 IPR002710 -
Trre6g05267 1516 Pfam IQ calmodulin-binding motif 782 801 IPR000048 GO:0005515
Trre6g05267 1516 Pfam IQ calmodulin-binding motif 806 824 IPR000048 GO:0005515
Trre6g05267 1516 Pfam IQ calmodulin-binding motif 830 850 IPR000048 GO:0005515
Trre6g05267 1516 Pfam IQ calmodulin-binding motif 757 776 IPR000048 GO:0005515
Trre6g05267 1516 PANTHER MYOSIN 804 1449 - -
Trre6g05267 1516 SMART iq_5 851 873 IPR000048 GO:0005515
Trre6g05267 1516 SMART iq_5 828 850 IPR000048 GO:0005515
Trre6g05267 1516 SMART iq_5 780 802 IPR000048 GO:0005515
Trre6g05267 1516 SMART iq_5 803 825 IPR000048 GO:0005515
Trre6g05267 1516 SMART iq_5 755 777 IPR000048 GO:0005515
Trre6g05267 1516 SMART iq_5 732 754 IPR000048 GO:0005515
Trre6g05267 1516 Gene3D Kinesin motor domain 63 660 IPR036961 -
Trre6g05267 1516 ProSiteProfiles Myosin motor domain profile. 60 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 779 IPR027417 -
Trre6g05267 1516 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 54 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre6g05267 1516 Coils Coil 949 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05267 Trre-Chr6 54569183 54591192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05267 1 1513 Myosins gene family AT4G33200 71.202 0.0 2217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05267 K10357 - gmx:100796413 2575.82