Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05254 ATGGATGGTAATAAGAATCAAGGTGGTGAAGTAAGTATGATGGAGAAGAAGAAAACAGAACAAGTTGTAGTAGCAATTTCAAATGATCATCATGATCATGACCATGACCATGACCATGACCATGATCACTATGCTTCAAAGTCACCACCTTTTAACTGTGCTTCTCCTGAGATAAGATTCTTCCCTAGCCCAAATAAGCCCCCAAAAATTCCAACTACAAACGAAAACCTTACCCCAAGAAAAAATCTTGCAAGATCAGTGTATTCTAAGCCCAAATCAAGATTTGGTGAACAACCTTATCCTATTGATAACACCCTTTTAGAGGAGAATGTTACTACTTCAACTATCCAAGAACACTTAGCTGTTACTTCACCTTATAGGAACTCAGTCAATAAAGGATCATCACATTCACCCAATAACAAATCCGGAATGGTTAATAGAACTGTTTCGATTACTTCTGTTGTCACTCCTAGAACACCTTTTTTGGCATCTCCAGGTCCTGCTGGTGAGGATCCTGATGAAATCATTTATAAGAAAGTTGAATTTAGTAAAGGCAAGCGTAAGAGACTAACGACTAAGGTTTTGATTGAATCGTTCGTGTTTGTGTGCATCGCGGGTAGCTTGTTGGCTAGTTTAACAGTTGAGGAACTAAGAAGGACACAAATTTGGAGTTTGAGGCTTTGGAGATGGTGTATGCTTGTGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAAGTGCTTTATTTTGTCCATGGATTGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTCTTGACATGGGTGCTTTTAATCAATCATCGCGGTGTCCAGAGATCGAAATTGGCAGCAAATATTTTGGATGGTGTAACATGGACTCTTGTTTCACTTCTCATTGGAGCATTTTTGTGGCTCATAAAAACAACGCTGCTAAAGATTCTGGCATCGAATTTCCACGTCAAATCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAGTACGTTCTGCAGACTCTCTCTGGGCCTCCACTTATGGAAGAGGCTGAGAAAGTCGGCGGATCTCAAAGTATTAGCCATTTTAGTTTCAGGAGTACAACCAGTAAAGGTAGCACAAAGAAAGAGGTTATTGATATGGCTAAGCTTCATAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGGCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAACGTTGCTGCTTCCGCTAGTTGCAAGGACATCGATGAGAATGAACTCCGTAGATTCCTGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGGCAGAAACCGGGCTAATTACCAGAAAATCTTTAGCAGATTGGGTGTTAAAGGTATATCAAGAACGGAAAGCACTGGCGCATGCATTAAGCGATACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACGGTGGTTCTAGTAGTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACCACAAAAGTACTTGTGTTCCTCTCATCGCAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACGTGCAAGAATATATTTGAAGCCATCATCTTCGTGTTTGTAATGCATCCATTCGATGTTGGCGATCGGTGTGTTATAGATGGCATTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAATATTCTTGAAACTTAATAATGAAAAGGTGTATTATCCCAACTCCGTCCTGGCCGTAAAACCGATCAGCAATTATTACAGAAGCCCTAGTATGGGCGACAGTGTAGAGTTCTCGGTTGATTTTATGACACCAGCAGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGAAATCCACAATATTGGTATCCTAGTCTAGGTTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTACTCACACAATGAACTTTCAAGATTTTGGAGAGAAGAACAAGCGGAGAAGTGAACTAGTGATGGAAGTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTATTCTACAAGGTGTTCATCTCAGACACTTGGAACCTGCTGATACAAGTTATCTCAAATGA 2307 0.3914 MDGNKNQGGEVSMMEKKKTEQVVVAISNDHHDHDHDHDHDHDHYASKSPPFNCASPEIRFFPSPNKPPKIPTTNENLTPRKNLARSVYSKPKSRFGEQPYPIDNTLLEENVTTSTIQEHLAVTSPYRNSVNKGSSHSPNNKSGMVNRTVSITSVVTPRTPFLASPGPAGEDPDEIIYKKVEFSKGKRKRLTTKVLIESFVFVCIAGSLLASLTVEELRRTQIWSLRLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGLKKCVQVFIWIGLVLLTWVLLINHRGVQRSKLAANILDGVTWTLVSLLIGAFLWLIKTTLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSISHFSFRSTTSKGSTKKEVIDMAKLHRMKQEKVSSWTMKILVDAVMNSRLATISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASASCKDIDENELRRFLIKEEVPLVFPLLAQAETGLITRKSLADWVLKVYQERKALAHALSDTKTAVKQLNKLVTVVLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGIELLVEEMNILTTIFLKLNNEKVYYPNSVLAVKPISNYYRSPSMGDSVEFSVDFMTPAEKIGALKEKVKRYLERNPQYWYPSLGLVVKEIENVNKIKMGLYVTHTMNFQDFGEKNKRRSELVMEVKKIFEELNIRYNLILQGVHLRHLEPADTSYLK 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05254 768 MobiDBLite consensus disorder prediction 28 46 - -
Trre6g05254 768 FunFam Predicted mechanosensitive ion channel 600 649 - -
Trre6g05254 768 MobiDBLite consensus disorder prediction 28 77 - -
Trre6g05254 768 Pfam Mechanosensitive ion channel 540 746 IPR006685 GO:0016020|GO:0055085
Trre6g05254 768 SUPERFAMILY Sm-like ribonucleoproteins 590 649 IPR010920 -
Trre6g05254 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 761 IPR016688 -
Trre6g05254 768 Gene3D - 600 649 IPR023408 -
Trre6g05254 768 PIRSF Memb_At2g17000 3 765 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05254 Trre-Chr6 54495826 54498808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05254 45 756 Mechanosensitive Ion Channel Family AT5G12080 58.298 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05254 K22048 - gmx:100777617 1123.61