Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05244 ATGGCGAATTCGGACGATAAGCTTCTTTTGGAGAGGGCACTACAGTATTATAGACGAGCATCACAGCTTTGTGGGGAACATGGTTACAGTGATGCAGTGACTGAGCTTACCCAGGCAATCGAGATTCAACCTATGATGCTTGAGGCTTTCCATTTGCGTGGAATTTGCTACACTAATTCATTACAATTTGAACTTGCTGAAGCCGACTATAGAAAGGCTATTGATACTCCCGAGATATATCATGCTTTAGGAAATGCACTCGCAATGAATGACAAATCTGAGGAAGCCATCGTTAATCTTCAAAAGGCTTATGACACCGTCAGGTTCAACAATTCCACCGCCTCTAAAGTGGAATTTATTTGGAAAAGCCTTGCTAGGGCCAAATATTTTTTCTGGTCACACAACAAAGCCCTTCAAGACAAGGAATTGGAGCATGTCCAGAAAGAATTGGAGCAGGCCAGGGATCCCTTGAGACATGATGCCCGTGAGATTCCACTCCATTTCCGGTGCTGCATCACATTCGACCTCCTCCGTGATCCGGTTGTGGCTCCGAGTGGGGTTTCCTTTGAAAGGAACAAAATTTTGGAATACTTAAAGAAATCGAAAGAAGACCCAACAACAAGGCAGCCTCTCGATGAGTCTCAGTTATATCCAAACAACAATTTAAGGGATGCTGTGGATGCATTTTTGGAAAGAAATTGGTGGGCATATTCTACATAG 720 0.4361 MANSDDKLLLERALQYYRRASQLCGEHGYSDAVTELTQAIEIQPMMLEAFHLRGICYTNSLQFELAEADYRKAIDTPEIYHALGNALAMNDKSEEAIVNLQKAYDTVRFNNSTASKVEFIWKSLARAKYFFWSHNKALQDKELEHVQKELEQARDPLRHDAREIPLHFRCCITFDLLRDPVVAPSGVSFERNKILEYLKKSKEDPTTRQPLDESQLYPNNNLRDAVDAFLERNWWAYST 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05244 239 Gene3D Tetratricopeptide repeat domain 7 137 IPR011990 GO:0005515
Trre6g05244 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 20 238 IPR045200 GO:0000209|GO:0061630
Trre6g05244 239 SUPERFAMILY RING/U-box 154 237 - -
Trre6g05244 239 SMART tpr_5 13 46 IPR019734 GO:0005515
Trre6g05244 239 SMART tpr_5 77 110 IPR019734 GO:0005515
Trre6g05244 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 235 IPR013083 -
Trre6g05244 239 SMART Ubox_2 167 229 IPR003613 GO:0004842|GO:0016567
Trre6g05244 239 Pfam U-box domain 164 233 IPR003613 GO:0004842|GO:0016567
Trre6g05244 239 ProSiteProfiles U-box domain profile. 163 236 IPR003613 GO:0004842|GO:0016567
Trre6g05244 239 SUPERFAMILY TPR-like 13 138 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05244 Trre-Chr6 54441404 54442536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05244 29 237 U-box Gene Family AT3G07370 31.727 4.87e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05244 K09561 - ncol:116257495 127.102