LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g05244	ATGGCGAATTCGGACGATAAGCTTCTTTTGGAGAGGGCACTACAGTATTATAGACGAGCATCACAGCTTTGTGGGGAACATGGTTACAGTGATGCAGTGACTGAGCTTACCCAGGCAATCGAGATTCAACCTATGATGCTTGAGGCTTTCCATTTGCGTGGAATTTGCTACACTAATTCATTACAATTTGAACTTGCTGAAGCCGACTATAGAAAGGCTATTGATACTCCCGAGATATATCATGCTTTAGGAAATGCACTCGCAATGAATGACAAATCTGAGGAAGCCATCGTTAATCTTCAAAAGGCTTATGACACCGTCAGGTTCAACAATTCCACCGCCTCTAAAGTGGAATTTATTTGGAAAAGCCTTGCTAGGGCCAAATATTTTTTCTGGTCACACAACAAAGCCCTTCAAGACAAGGAATTGGAGCATGTCCAGAAAGAATTGGAGCAGGCCAGGGATCCCTTGAGACATGATGCCCGTGAGATTCCACTCCATTTCCGGTGCTGCATCACATTCGACCTCCTCCGTGATCCGGTTGTGGCTCCGAGTGGGGTTTCCTTTGAAAGGAACAAAATTTTGGAATACTTAAAGAAATCGAAAGAAGACCCAACAACAAGGCAGCCTCTCGATGAGTCTCAGTTATATCCAAACAACAATTTAAGGGATGCTGTGGATGCATTTTTGGAAAGAAATTGGTGGGCATATTCTACATAG	720	0.4361	MANSDDKLLLERALQYYRRASQLCGEHGYSDAVTELTQAIEIQPMMLEAFHLRGICYTNSLQFELAEADYRKAIDTPEIYHALGNALAMNDKSEEAIVNLQKAYDTVRFNNSTASKVEFIWKSLARAKYFFWSHNKALQDKELEHVQKELEQARDPLRHDAREIPLHFRCCITFDLLRDPVVAPSGVSFERNKILEYLKKSKEDPTTRQPLDESQLYPNNNLRDAVDAFLERNWWAYST	239

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g05244	239	Gene3D	Tetratricopeptide repeat domain	7	137	IPR011990	GO:0005515
	Trre6g05244	239	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	20	238	IPR045200	GO:0000209\|GO:0061630
	Trre6g05244	239	SUPERFAMILY	RING/U-box	154	237	-	-
	Trre6g05244	239	SMART	tpr_5	13	46	IPR019734	GO:0005515
	Trre6g05244	239	SMART	tpr_5	77	110	IPR019734	GO:0005515
	Trre6g05244	239	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	140	235	IPR013083	-
	Trre6g05244	239	SMART	Ubox_2	167	229	IPR003613	GO:0004842\|GO:0016567
	Trre6g05244	239	Pfam	U-box domain	164	233	IPR003613	GO:0004842\|GO:0016567
	Trre6g05244	239	ProSiteProfiles	U-box domain profile.	163	236	IPR003613	GO:0004842\|GO:0016567
	Trre6g05244	239	SUPERFAMILY	TPR-like	13	138	IPR011990	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g05244	Trre-Chr6	54441404	54442536	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g05244	29	237	U-box Gene Family	AT3G07370	31.727	4.87e-34	122

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g05244	K09561		-	ncol:116257495	127.102

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