Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g05243 ATGGAAGAGGCTGAGAAAGTCGGCGGATCTCAAAGTATTAGCCATTTTAGTTTCAGGAGTACAACCAGTAAAGGTAGCACAAAGAAAGAGGTTATTGATATGGCTAAGCTTCATAGGATGAAGCAAGAGAAAGTTTCGTCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTAGATGAAACTTTTTATGATGTAGACAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAACGTTGCTGCTTCCGCTAGTTGCAAGGATATCGATGAGAATGAACTCCGTAGATTCCTGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGGCAGAAACCGGGCTAATTACCAGAAAATCTTTAACAGATTGGGTGTTAAAGGTATATCAAGAACGTAAAGCACTGGCGCATGCATTAAGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTCTTAGTAGTGGTGACCATAGTCGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTGTTTGTAATGCATCCATTCGATGTTGGTGATCGGTGTGTTATAGATGGCATTGAGCTATTGGTCGAAGAAATGAATATATTGACAACAGTATTCTTGAAACTTAATAATGAAAAGGTGTATTATCCTAACTCTGTCCTGGCCGTAAAGCCGATCAGCAATTATTACAGAAGCCCTAGTATGGGCGACAGTGTAGAGTTCTCGGTTGATTTTATGACACCAGCGGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGAAATCCAAAATATTGGTATCCTAATTTTGGCTTGGTAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTACGCACACAATTAACTTTCAAGAGTTCGGCGAGAAGACAAAGCGGAGAAGTGAACTAGTCATGGAAGTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTATTCCACAAGGTGTTCATCTCCGACACTTGGAACCTGATACAAGTTATCTCAAATGA 1206 0.3889 MEEAEKVGGSQSISHFSFRSTTSKGSTKKEVIDMAKLHRMKQEKVSSWTMKILVDAVMNSRLSTISNSLDETFYDVDNEQTDKEITNEMEATAAAYYVFRNVAASASCKDIDENELRRFLIKEEVPLVFPLLAQAETGLITRKSLTDWVLKVYQERKALAHALSDTKTAVKQLNKLVTVVLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGIELLVEEMNILTTVFLKLNNEKVYYPNSVLAVKPISNYYRSPSMGDSVEFSVDFMTPAEKIGALKEKVKRYLERNPKYWYPNFGLVVKEIENVNKIKMGLYVTHTINFQEFGEKTKRRSELVMEVKKIFEELNIRYNLIPQGVHLRHLEPDTSYLK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g05243 401 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g05243 401 FunFam Predicted mechanosensitive ion channel 234 283 - -
Trre6g05243 401 Gene3D - 234 283 IPR023408 -
Trre6g05243 401 Pfam Mechanosensitive ion channel 174 380 IPR006685 GO:0016020|GO:0055085
Trre6g05243 401 SUPERFAMILY Sm-like ribonucleoproteins 223 283 IPR010920 -
Trre6g05243 401 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 20 396 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g05243 Trre-Chr6 54436952 54438790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g05243 1 390 Mechanosensitive Ion Channel Family AT5G12080 63.520 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g05243 K22048 - gmx:100803107 644.039